Transcriptator specifications

Information


Unique identifier OMICS_10723
Name Transcriptator
Interface Web user interface
Restrictions to use None
Programming languages Java, Python
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Kumar Parijat Tripathi <>

Publication for Transcriptator

Transcriptator in publications

 (3)
PMCID: 5850946
PMID: 29536825
DOI: 10.1186/s12859-018-2036-2

[…] patterns in the sub-network with respect to signaling and intracellular protein transport, we use reactomefi-plugin [] in cytoscape, to integrate the reactome database [], and other tools such as transcriptator [] and metabox library []. taking a fdr cut-off value ≤0.05, we carry out pathway enrichment analysis for a set of genes in a given sub network, and investigate the functional […]

PMCID: 5850943
PMID: 29536823
DOI: 10.1186/s12859-018-2035-3

[…] dataset) of gene signatures, to understand the importance of gene signatures with respect to biological function and toxicological effects, we used comparative toxicogenomics database (ctd) [] and transcriptator web-application [] for the enrichment analysis of chemical association, diseases, pathways and gene ontology terms for our gene signatures. the ctd database is publicly available […]

PMCID: 5046195
PMID: 28185543
DOI: 10.1186/s12859-016-1172-9

[…] huge amount of data in biological information is still a key issue, reason for which the creation of web-resources useful for their analysis is highly desiderable., starting from a previous work, transcriptator, we present the atlas of hydra’s vulgaris, an extensible web tool in which its complete transcriptome is annotated. in order to provide to the users an advantageous resource […]


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Transcriptator institution(s)
Laboratory for Genomics, Transcriptomics and Proteomics (LAB-GTP), High Performance Computing and Networking Institute (ICAR), National Research Council of Italy (CNR), Napoli, Italy
Transcriptator funding source(s)
Supported by the INTEROMICS flagship project PON02-00612- 3461281 and PON02-00619-3470457 and National Research University Higher School of Economics RSF grant 365 14-41-00039.

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