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TCW | Transcriptome computational workbench

Serves for methodical analysis for both single and comparative transcriptome data. TCW contains two manager programs: (1) singleTCW for building a database of annotated sequences with differential expression (DE) results for a single species; and (2) multiTCW for building a database of multiple species with comparison results. This approach can be used for the large-scale processing and online databases to extract information.

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TCW forum

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TCW classification

TCW specifications

Unique identifier:
OMICS_01940
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Programming languages:
Java
Computer skills:
Advanced
Maintained:
Yes
Name:
Transcriptome Computational Workbench
Interface:
Command line interface, Graphical user interface
Input data:
A sequence.
Operating system:
Unix/Linux, Mac OS
Database management system:
MySQL
Stability:
Stable

TCW distribution

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No versioning.

TCW support

Maintainer

  • Carol Soderlund <>

Credits

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Publications

Institution(s)

BIO5 Institute, University of Arizona, Tucson, AZ, USA; Washington State University, Pullman, WA, USA

Funding source(s)

Supported by National Science Foundation grant IOS-1044821.

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