Transcriptome analysis software tools and databases

Transcriptomics applications

Transcriptomics is the study of the transcriptome-the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell-using high-throughput methods, such as microarray analysis. Comparison of transcriptomes allows the…

Transcriptome analysis software tools and databases

Most Recent Tools

Desktop app
A A A GUItars GUItars

GUItars

Enables researchers without a programming background to use strictly…

Enables researchers without a programming background to use strictly standardized mean difference (SSMD) as both a plate quality and a hit selection metric to analyze large data sets. GUItars is…

Web app
A A A microRNA Discovery microRNA Discovery

miRDis microRNA Discovery

Supports the annotation and expression profiling data of known host miRNAs and…

Supports the annotation and expression profiling data of known host miRNAs and the detection of novel miRNAs, other noncoding RNAs, and the exogenous miRNAs from dietary species. miRDis is a small…

Desktop app
A A A alignment of pattern… alignment of pattern matrices score

ALPS alignment of pattern matrices score

Classifies ncRNAs by using primary information from a deep sequencing…

Classifies ncRNAs by using primary information from a deep sequencing experiment, i.e. the relative positions and lengths of reads. ALPS is not designed to recognize a certain class of ncRNA, it can…

Desktop app
A A A Patched RNA-seq Read… Patched RNA-seq Read Segments'…

PR2S2Clust Patched RNA-seq Read Segments' Structure-oriented Clustering

Extracts features to prepare the secondary structure profiles of the RNA-seq…

Extracts features to prepare the secondary structure profiles of the RNA-seq read segments. PR2S2Clust provides a strategy to employ the profiles to annotate the segments into ncRNA classes using…

Most Popular Tools

Desktop app
A A A MiRdup MiRdup

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

Web app
A A A Enrichr Enrichr

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

Web app
A A A Riboswitch Scanner Riboswitch Scanner

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Web app
Genevestigator Genevestigator

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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