Transcriptome analysis software tools and databases

Transcriptomics is the study of the transcriptome-the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell-using high-throughput methods, such as microarray analysis. Comparison of…

Transcriptomics applications

Transcriptome analysis software tools and databases

Most Recent Tools

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JNSViewer
Web

JNSViewer JavaScript-based Nucleotide Sequence secondary structure Viewer

Offers a web interface that can present precise connection among nucleotide…

Offers a web interface that can present precise connection among nucleotide sequences, pairing and folding information, biological annotations, and secondary structure graphs. JNSViewer is a web…

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iDeepS
Desktop

iDeepS

Infers both sequence and structure preferences of RNA-binding proteins (RBPs).…

Infers both sequence and structure preferences of RNA-binding proteins (RBPs). iDeepS is a deep learning method which consists of convolutional neural networks (CNNs) and a Bidirectional Long Short…

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Ensembl…
Dataset

Ensembl Regulatory Build

Provides a high-level overview of the regulatory activity of the genome. The…

Provides a high-level overview of the regulatory activity of the genome. The Ensembl Regulatory Build offers putative regulatory regions from public experimental data, and associate these regions…

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Achilles
Dataset

Achilles

Identifies and catalogues genetic vulnerabilities across hundreds of…

Identifies and catalogues genetic vulnerabilities across hundreds of genomically characterized cancer cell lines. Achilles is a project to facilitates the discovery of context-specific dependencies,…

Most Popular Tools

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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