Transcriptome analysis software tools and databases

Transcriptomics applications

Transcriptomics is the study of the transcriptome-the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell-using high-throughput methods, such as microarray analysis. Comparison of transcriptomes allows the…

Transcriptome analysis software tools and databases

Most Recent Tools

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SemanticSCo
Desktop

SemanticSCo

Provides support for the composition of RESTful web services semantically…

Provides support for the composition of RESTful web services semantically annotated using SAWSDL. SemanticSCo is a supporting platform that supports the definition of constraints/conditions regarding…

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exo-miRExplorer
Dataset

exo-miRExplorer

Provides users with an integrative resource to facilitate detection and…

Provides users with an integrative resource to facilitate detection and analysis of exo-miRNAs. exo-miRExplorer is a database for mining and identifying exo-miRNAs from high-throughput small RNA…

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miRNA-ensemble
Desktop

miRNA-ensemble

Classifies multiple cancers using miRNA expression data. miRNA-ensemble is a…

Classifies multiple cancers using miRNA expression data. miRNA-ensemble is a feature subset-based ensemble method. This method has three major steps: i) generation of multiple miRNA subsets based on…

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GenExpDB
Dataset

GenExpDB E. coli Gene Expression Database

Provides reference genome of the E. coli. GenExpDB can be searchable by gene,…

Provides reference genome of the E. coli. GenExpDB can be searchable by gene, locus or location. It is based on NCBI Gene Expression Omnibus’s information. The database contains 3194 samples of…

Most Popular Tools

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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