Transcriptome analysis software tools and databases

Transcriptomics applications

Transcriptomics is the study of the transcriptome-the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell-using high-throughput methods, such as microarray analysis. Comparison of transcriptomes allows the…

Transcriptome analysis software tools and databases

Most Recent Tools

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est2genome
Desktop

est2genome

Aligns EST sequences to genomic DNA sequence. est2genome aids the prediction of…

Aligns EST sequences to genomic DNA sequence. est2genome aids the prediction of genes by sequence homology. It aligns a set of spliced nucleotide sequences (ESTs cDNAs or mRNAs) to an unspliced…

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GLAD
Data

GLAD Gene List Annotation for Drosophilia

Lists functionally related Drosophila genes, e.g. based on protein domains…

Lists functionally related Drosophila genes, e.g. based on protein domains (kinases, transcription factors, etc.) or cellular function (e.g. autophagy, signal transduction). GLAD relies on different…

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Pln24NT
Data

Pln24NT

Centralizes 24 nucleotide small interfering RNA (24-nt siRNA) loci and…

Centralizes 24 nucleotide small interfering RNA (24-nt siRNA) loci and information, including fundamental locus information, expression profiles and annotation of transposon elements, from…

Glimma
Desktop

Glimma

Creates interactive graphics for exploring gene expression analysis with a few…

Creates interactive graphics for exploring gene expression analysis with a few simple R commands. Glimma extends popular plots found in the limma package, such as multi-dimensional scaling plots and…

Most Popular Tools

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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