Transcriptome analysis software tools and databases

Transcriptomics is the study of the transcriptome-the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell-using high-throughput methods, such as microarray analysis. Comparison of…

Transcriptomics applications

Most recent bioinformatics tools

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siRNA design
Web

siRNA design

Allows users to upload their gene fusion sequences. sIRNA design provides an…

Allows users to upload their gene fusion sequences. sIRNA design provides an interface where siRNA sequences can be designed using a combination of four prediction tools namely RNAxs, BiLTR, siDirect…

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mtsRPFdb
Dataset

mtsRPFdb Mouse Tissue-Specific Ribosome Protected Fragment Database

Provides data of tissue-specific ribosome protected fragments in mice. mtsRPFdb…

Provides data of tissue-specific ribosome protected fragments in mice. mtsRPFdb offers about 28,500 genes’ transcriptional and translational expression information. It offers a web browser that…

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RiboSeqDB
Dataset

RiboSeqDB

Contains structured summary, links to the selected data sets in mouse and human…

Contains structured summary, links to the selected data sets in mouse and human cells. RiboSeqDB provides users with reliable informatics support, fast and convenient navigation, data search, supply…

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RNA Editing…
Web

RNA Editing Plus

Integrates acquisition, storage, display and analysis of high-throughput RNA…

Integrates acquisition, storage, display and analysis of high-throughput RNA data. RNA Editing Plus allows for seamless integration of multiple, published or locally produced data sets via loading…

Most popular analytical software and databases

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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