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Transcriptome software tools and databases

Transcriptomics is the study of the transcriptome-the complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell-using high-throughput methods, such as microarray analysis. Comparison of…

Transcriptomics applications

Most recent bioinformatics tools

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RWRlncD
Desktop

RWRlncD

Predicts novel long non-coding RNAs (lncRNA)-disease associations. RWRlncD is a…

Predicts novel long non-coding RNAs (lncRNA)-disease associations. RWRlncD is a computational framework that allows inference of potential lncRNA-disease associations by random walk with restart on…

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ILNCSIM
Web

ILNCSIM Improved LNCRNA functional SIMilarity calculation model

Quantifies long non-coding RNAs (lncRNA) functional similarity by combining…

Quantifies long non-coding RNAs (lncRNA) functional similarity by combining known disease Directed Acyclic Graphs (DAGs) and known lncRNA-disease associations. ILNCSIM is implemented in a web server…

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KATZLDA
Desktop

KATZLDA KATZ measure for LncRNA-Disease Association prediction

Predicts potential lncRNA-disease associations. KATZLDA was developed for…

Predicts potential lncRNA-disease associations. KATZLDA was developed for predicting potential disease-related Long non-coding RNA (lncRNAs) by measuring the importance of candidate nodes relative to…

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MFLDA
Desktop

MFLDA Matrix Factorization based LncRNA-Disease Association

Allows identification of lncRNA-disease associations. MFLDA is a matrix…

Allows identification of lncRNA-disease associations. MFLDA is a matrix factorization based data fusion model that integrates various heterogenous data sources to predict associations between…

Most popular analytical software and databases

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VENNY
Web

VENNY

Allows comparison of lists with Venn Diagrams. VENNY is a web-server,…

Allows comparison of lists with Venn Diagrams. VENNY is a web-server, consisting in a single standard html file that can be used off-line.

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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