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TRANSFAC screenshot

Provides data on eukaryotic transcription factors, their experimentally-proven binding sites, consensus binding sequences (positional weight matrices) and regulated genes. TRANSCompel contains data on eukaryotic transcription factors experimentally proven to act together in a synergistic or antagonistic manner.

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Probably one of the best annotated and curated resource of transcription factor binding preferences…

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  • (Wingender, 2008) The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation. Briefings in bioinformatics.
    PMID: 18436575
  • (Matys et al., 2006) TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research.
    PMID: 16381825
  • (Matys et al., 2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic acids research.
    PMID: 12520026
  • Animals
  • Fungi
  • Plants
  • Protists

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