TransfactomeDB specifications

Information


Unique identifier OMICS_13257
Name TransfactomeDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Maintainer


This tool is not available anymore.

Publication for TransfactomeDB

TransfactomeDB citations

 (2)
library_books

Epistatic relationships reveal the functional organization of yeast transcription factors

2010
Mol Syst Biol
PMCID: 2990640
PMID: 20959818
DOI: 10.1038/msb.2010.77

[…] Genome-wide occupancy data were downloaded from Yeast TransfactomeDB (). Position-specific affinity matrices (PSAMs) was derived using MatrixReduce (, ) from ChIP-chip data (). The PSAM for a transcription factor was then used to calculate the occupancy […]

library_books

BayesPI a new model to study protein DNA interactions: a case study of condition specific protein binding parameters for Yeast transcription factors

2009
BMC Bioinformatics
PMCID: 2771022
PMID: 19857274
DOI: 10.1186/1471-2105-10-345

[…] base version 8.3. The consensus sequences of yeast TFs were found in the SGD[] database (~61 TFs). The position-specific affinity matrices (~203 TFs) inferred by MatrixREDUCE were downloaded from the TransfactomeDB database[]. […]

TransfactomeDB institution(s)
Department of Biological Sciences, Columbia University, New York, NY, USA; Integrated Program in Cellular, Molecular and Biophysical Studies and Center for Computational Biology and Bioinformatics, Columbia University, New York, NY, USA
TransfactomeDB funding source(s)
This work was supported by National Institutes of Health (NIH) training grant T32GM008798 and grants R01HG003008, U54CA121852.

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