TRANSIT specifications

Information


Unique identifier OMICS_10215
Name TRANSIT
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data TRANSIT takes .wig files as input, which contain counts of reads (or unique templates) observed at each TA site. In this way, TRANSIT accepts datasets prepared with any pre-processing or custom protocol.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements Scipy, wxPython
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Michael A. DeJesus <>

Publication for TRANSIT

TRANSIT institution(s)
Department of Computer Science, Texas A&M University, College Station, TX, USA
TRANSIT funding source(s)
This work was supported by the National Institutes of Health grant U19 AI107774.

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