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Translated mRNA databases| Gene expression data analysis

Translational control is crucial in the regulation of gene expression and deregulation of translation is associated with a wide range of cancers and human diseases. Ribosome profiling is a technique that provides genome wide information of mRNA in…
Pathology Atlas
Dataset

Pathology Atlas

Gathers information about the protein-coding genes of seventeen major cancer…

Gathers information about the protein-coding genes of seventeen major cancer types and their genome-wide transcriptome. Pathology Atlas is an open-access database, part of the Human Protein Atlas,…

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GWIPS-viz
Dataset

GWIPS-viz Genome Wide Information on Protein Synthesis visualized

Provides access to the genomic alignments of public ribo-seq reads in…

Provides access to the genomic alignments of public ribo-seq reads in conjunction with mRNA-seq reads along with relevant annotation tracks. GWIPS-viz is a specialized ribo-seq browser allowing…

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AceView
Web

AceView

Provides a strictly cDNA-supported view of the human transcriptome and the…

Provides a strictly cDNA-supported view of the human transcriptome and the genes. AceView summarizes all quality-filtered human cDNA data from GenBank, dbEST and the RefSeq. It uses heuristics to…

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sORFs.org
Dataset

sORFs.org

Allows to identify short open reading frames (sORFS). SORFS.org presents two…

Allows to identify short open reading frames (sORFS). SORFS.org presents two interfaces: (1) The default query interface provides real-time lookup of sORFs with limited query possibilities and (2) a…

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SmProt
Dataset

SmProt Small Proteins database

Contains several information about small proteins. SmProt is a database that…

Contains several information about small proteins. SmProt is a database that provides a user-friendly website for users to submit, browse, search, blast, download or export data about small proteins.…

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PromEC
Dataset

PromEC

An updated database of E. coli mRNA promoters with experimentally identified…

An updated database of E. coli mRNA promoters with experimentally identified transcriptional start sites.

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RPFdb
Dataset

RPFdb

A comprehensive resource for hosting, analyzing and visualizing ribosome…

A comprehensive resource for hosting, analyzing and visualizing ribosome protected mRNA fragment (RPF) data. RPFdb contains 777 samples from 82 studies in 8 species, processed and reanalyzed by a…

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tsORFdb
Dataset

tsORFdb

Lists all possible sORFs (Small Open Reading Frames) from whole genome sequence…

Lists all possible sORFs (Small Open Reading Frames) from whole genome sequence data that can be predicted through bioinformatic approaches. tsORFdb is a web-enabled database that was developed for…

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RiboSeqDB
Dataset

RiboSeqDB

Contains structured summary, links to the selected data sets in mouse and human…

Contains structured summary, links to the selected data sets in mouse and human cells. RiboSeqDB provides users with reliable informatics support, fast and convenient navigation, data search, supply…

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mtsRPFdb
Dataset

mtsRPFdb Mouse Tissue-Specific Ribosome Protected Fragment Database

Provides data of tissue-specific ribosome protected fragments in mice. mtsRPFdb…

Provides data of tissue-specific ribosome protected fragments in mice. mtsRPFdb offers about 28,500 genes’ transcriptional and translational expression information. It offers a web browser that…

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