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Translation initiation site databases| Gene expression data analysis

Translation initiation site (TIS) identification is an important aspect of the gene annotation process, requisite for the accurate delineation of protein sequences from transcript data.Source text:(Sparks and Brendel 2008) MetWAMer: eukaryotic…
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VIPS
Web

VIPS Viral IRES Prediction System

Performs the internal ribosomal entry site (IRES) secondary structure…

Performs the internal ribosomal entry site (IRES) secondary structure prediction. VIPS is a software which can evaluate and predict for all four different groups of IRESs. The software integrates RNA…

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IRESite
Dataset

IRESite

Presents carefully curated experimental evidence of many eukaryotic viral and…

Presents carefully curated experimental evidence of many eukaryotic viral and cellular internal ribosome entry site (IRES) regions. The IRESite gradually evolved into a robust tool providing (i)…

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TISdb
Dataset

TISdb

It is based on the recently developed Global Translation Initiation sequencing…

It is based on the recently developed Global Translation Initiation sequencing (GTI-seq) technology, which provides global mapping of TIS codons at nearly single-nucleotide resolution. GTI-seq has…

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HCVIVdb
Dataset

HCVIVdb HCV IRES variation database

Focuses on the reported variations of the hepatitis C virus (HCV) internal…

Focuses on the reported variations of the hepatitis C virus (HCV) internal ribosomal entry site (IRES) that have been found in patients and/or purposely introduced to the viral genome and on the…

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IRSS
Web

IRSS

Allows automatic layout and analysis of internal ribosomal entry site (IRES)…

Allows automatic layout and analysis of internal ribosomal entry site (IRES) secondary structure prediction and searching system in silico. IRSS is a web based IRES search system which is a search…

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IRESPred
Web

IRESPred

Supports both, cellular and viral internal ribosome entry site (IRES)…

Supports both, cellular and viral internal ribosome entry site (IRES) prediction. IRESPred is an algorithm and a web server designed, developed and validated for prediction of viral and cellular…

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