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Translation initiation site detection software tools | Gene expression data analysis

Translation is a key process for gene expression. Timely identification of the translation initiation site (TIS) is very important for conducting in-depth genome analysis. With the avalanche of genome sequences generated in the postgenomic age, it…
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AtRTD_translation_pipeline
Desktop
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TITER
Desktop

TITER Translation Initiation site Detector

Predicts translation initiation sites (TISs) based on the available…

Predicts translation initiation sites (TISs) based on the available high-throughput sequencing (HTS) data. TITER is a deep learning based framework that allows to model the sequence features of…

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ATGpr
Web

ATGpr

A program for identifying the initiation codons in cDNA sequences. ATGpr can be…

A program for identifying the initiation codons in cDNA sequences. ATGpr can be used to predict whether an initiation codon is present or absent in a piece of cDNA and which ATG is the initiation…

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Dragon TIS Spotter
Web

Dragon TIS Spotter Dragon Translation Initiation Site Spotter

Predicts translation initiation sites (TISs) in Arabidopsis genomic sequences.…

Predicts translation initiation sites (TISs) in Arabidopsis genomic sequences. Its sensitivity/specificity is for A.t. (90.75%/92.2%), for Vitis vinifera (66.8%/94.4%) and for Populus trichocarpa…

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StartScan
Web

StartScan

Recognizes translation initiation sites in human DNA sequences. StartScan…

Recognizes translation initiation sites in human DNA sequences. StartScan obtains a false positive rate of 0.125 at a sensitivity of 0.80 on a well annotated human chromosome (chromosome 21).

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MetWAMer
Desktop

MetWAMer

A package for translation initiation site (TIS) prediction in eukaryotic open…

A package for translation initiation site (TIS) prediction in eukaryotic open reading frames of non-viral origin. MetWAMer can be used as a stand-alone, third-party tool for post-processing gene…

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TISHunter
Web

TISHunter

A highly accurate predictor for translation initiation sites in human mRNAs.…

A highly accurate predictor for translation initiation sites in human mRNAs. Our algorithm includes two novel ideas. First, we introduce a class of new sequence-similarity kernels based on string…

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NetStart
Web

NetStart

Produces neural network predictions of translation start in vertebrate and…

Produces neural network predictions of translation start in vertebrate and Arabidopsis thaliana nucleotide sequences. NetStart has been trained on cDNA-like sequences and will therefore presumably…

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TIS Miner
Web

TIS Miner

Predicts translation initiation site(s) in vertebrate DNA/mRNA/cDNA sequences.…

Predicts translation initiation site(s) in vertebrate DNA/mRNA/cDNA sequences. TIS Miner was trained on 3,312 vertebrate mRNA sequences. The training accuracy is 92.45% at 80.19% sensitivity and…

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TICO
Desktop
Web

TICO Translation Initiation site Correction

A software tool for improving the results of conventional gene finders for…

A software tool for improving the results of conventional gene finders for prokaryotic genomes with regard to exact localization of the translation initiation site (TIS). At the current state TICO…

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MetaTISA
Desktop

MetaTISA

A software tool to improve TIS prediction of current gene-finders for…

A software tool to improve TIS prediction of current gene-finders for metagenomes. The method employs a two-step strategy to predict translation initiation sites (TISs) by first clustering…

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TriTISA
Desktop

TriTISA

A simple method for accurate prediction of translation initiation site (TIS) of…

A simple method for accurate prediction of translation initiation site (TIS) of microbial genomes. TriTISA classifies all candidate TISs into three categories based on evolutionary properties, and…

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iTIS-PseTNC
Web

iTIS-PseTNC

A sequence-based predictor for identifying translation initiation site in human…

A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition. It was observed by the rigorous cross-validation test on the benchmark…

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