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Translational efficiency detection software tools | Gene expression data analysis

Translation has been the subject of intense modelling efforts in the last five decades, using various mathematical and computational approaches (Shah et al., 2013; Gerst and Levine, 1965; MacDonald and Gibbs, 2004; Gilchrist and Wagner, 2006;…
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stalcalc
Web
Desktop

stalcalc

Infers the species-specific tRNA Adaptation Index (tAI) wobble weights.…

Infers the species-specific tRNA Adaptation Index (tAI) wobble weights. Stalcalc is an online tool that provides the tAI value of the sequence as well as the normalized tAI values of each coding…

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RiboAbacus
Desktop

RiboAbacus

A model trained on experimental imaging-derived data, able to quickly and…

A model trained on experimental imaging-derived data, able to quickly and accurately predict the steady state number of ribosomes per transcript in entire transcriptomes. RiboAbacus uses a…

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