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Translational research integrative tools | Genome annotation

The rise of personalized medicine and the availability of high-throughput molecular analyses in the context of clinical care have increased the need for adequate tools for translational researchers to manage and explore these data. Source text:…
DataSHIELD
Desktop
cBioPortal
Web

cBioPortal

Provides a web resource for exploring, visualizing, and analyzing…

Provides a web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. cBioPortal reduces molecular profiling data from cancer tissues and cell lines into readily…

GigaDB
Dataset

GigaDB

Hosts data and software tools associated with articles in GigaScience, and also…

Hosts data and software tools associated with articles in GigaScience, and also a subset of data sets that is not associated with the journal. GigaDB is a database where a data set is defined as a…

IntelliEppi
Desktop

IntelliEppi

Stores and modifies molecules by monitoring, guiding and storing reaction…

Stores and modifies molecules by monitoring, guiding and storing reaction vessels in defined positions. IntelliEppi is a holistic system that incorporates product data management (PDM) from the start…

G-DOC
Dataset

G-DOC Georgetown Database of Cancer

Contains molecular and clinical data from thousands of patients and cell lines,…

Contains molecular and clinical data from thousands of patients and cell lines, along with tools for analysis and data visualization. G-DOC Plus enables the integrative analysis of multiple data…

tranSMART-XNAT…
Desktop

tranSMART-XNAT Connector

Consists of components for data capture, organisation and analysis.…

Consists of components for data capture, organisation and analysis. TranSMART-XNAT Connector organises data in a similar fashion as tranSMART and stores in a format that allows direct analysis within…

CGDM
Dataset

CGDM Collaborative Genomic Data Model

A collaborative genomic data model aimed at significantly increasing the query…

A collaborative genomic data model aimed at significantly increasing the query processing speed for the main classes of queries on genomic databases. CGDM has been created for high-throughput…

BRISK
Desktop

BRISK Biology-Related Information Storage Kit

A package of several web-based data management tools that provide a cohesive…

A package of several web-based data management tools that provide a cohesive data integration and management platform.

iDASH
Desktop
SBDG
Dataset

SBDG Structural Biology Data Grid

Allows users to discover, download and deposit large structural biology…

Allows users to discover, download and deposit large structural biology datasets. SBDG is a flexible data publication system that allows deposition of a variety of large primary datasets. The…

InSilico DB
Web

InSilico DB

A collaborative platform that allows users to share genomic datasets. Dataset…

A collaborative platform that allows users to share genomic datasets. Dataset administrators can add/remove collaborators or groups of collaborators through a dedicated sharing interface. It is…

tranSMART
Desktop

tranSMART

An emerging global open source public private partnership community developing…

An emerging global open source public private partnership community developing a comprehensive informatics-based analysis and data-sharing cloud platform for clinical and translational research.

Vivli
Web

Vivli

Permits to host data securely, with search and data-request services. Vivli…

Permits to host data securely, with search and data-request services. Vivli allows to combine data sets from multiple clinical trials now held in different electronic locations. It provides a path to…

EGDMS
Desktop

EGDMS eGenVar data management system

Provides a common framework for cataloguing and sharing both public and private…

Provides a common framework for cataloguing and sharing both public and private data.

canEvolve
Web

canEvolve

Allows researchers to query results of different types of analysis with a view…

Allows researchers to query results of different types of analysis with a view to generate novel hypotheses. canEvolve stores functional genomics and other large-scale data on cancer. It assists…

Dryad
Dataset

Dryad

Stores open-licensed educational modules. Dryad is a database which allows…

Stores open-licensed educational modules. Dryad is a database which allows students in advanced secondary, undergraduate, and early graduate courses to work on real data. It allows users to discover,…

Dataverse
Web

Dataverse

Allows scholarly recognition for data contributions. Dataverse can be used to…

Allows scholarly recognition for data contributions. Dataverse can be used to specify if data requires special authorization for use due to their confidential or proprietary nature. It enables the…

iCOD
Desktop

iCOD integrated Clinical Omics Database

Developed to combine the molecular and clinico-pathological information of the…

Developed to combine the molecular and clinico-pathological information of the patients to provide the holistic understanding of the disease.

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