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Transpogene specifications

Information


Unique identifier OMICS_12336
Name Transpogene
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Transpogene

Maintainer


  • person_outline Gil Ast

Publication for Transpogene

Transpogene citations

 (3)
library_books

Adaptive Evolution Coupled with Retrotransposon Exaptation Allowed for the Generation of a Human Protein Specific Coding Gene That Promotes Cancer Cell Proliferation and Metastasis in Both Haematological Malignancies and Solid Tumours: The Extraordinary Case of MYEOV Gene

2015
PMCID: 4629056
PMID: 26568894
DOI: 10.1155/2015/984706

[…] presence of TEs by RepeatMasker []. The program was run in both default and sensitive mode, using a matrix optimal for MYEOV GC level to avoid false masking. Respective searches using PLOTREP [], the TranspoGene database [], and BLASTN [, ] were also performed. MYEOV locus automated alignments downloaded from the UCSC Genome Browser Database [–] were used to extract syntenic DNA segments in numero […]

library_books

Inferring the expression variability of human transposable element derived exons by linear model analysis of deep RNA sequencing data

2013
BMC Genomics
PMCID: 3765721
PMID: 23984937
DOI: 10.1186/1471-2164-14-584

[…] We downloaded Table Human Exonized TEs from the TranspoGene website []. Genome coordinates were converted from hg18 (Human Genome version 18) to hg19 by the LiftOver tool hosted on the UCSC genome browser server []. The location in the host gene, l […]

library_books

Genome Wide Detection of Gene Coexpression Domains Showing Linkage to Regions Enriched with Polymorphic Retrotransposons in Recombinant Inbred Mouse Strains

2013
PMCID: 3618347
PMID: 23550129
DOI: 10.1534/g3.113.005546

[…] C57BL/6J and A/J and thus nonpolymorphic between the two strains. To obtain data on the abundance of “fixed” TEs in mice, lists of TEs located within all protein-coding genes were downloaded from the TranspoGene database (http://transpogene.tau.ac.il). Recombination rates across the mouse genomes corresponded to the values calculated in a recent report ().Data on genomic binding sites for several […]

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Transpogene institution(s)
Department of Molecular Genetics and Biochemistry, Tel-Aviv University Medical School, Tel Aviv, Israel
Transpogene funding source(s)
Supported by the Cooperation Program in Cancer Research of the Deutsches Krebsforschungszentrum (DKFZ) and Israel’s Ministry of Science and Technology (MOST).

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