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Transporters datases | Membrane proteins

TransportDB
Dataset

TransportDB

Provides annotations for predicted transporters across sequenced genomes.…

Provides annotations for predicted transporters across sequenced genomes. TransportDB serves the membrane transporter annotation of 2777 complete genomes, comprising 2557 eubacteria, 164 archaea and…

ARAMEMNON
Dataset

ARAMEMNON

A resource designed for scientists, who look for a convenient way to access…

A resource designed for scientists, who look for a convenient way to access data about individual plant membrane proteins and membrane protein families. Currently, ARAMEMNON provides membrane protein…

MCPep
Web

MCPep

Explores the interactions of helical peptides of up to 50 residues with…

Explores the interactions of helical peptides of up to 50 residues with membranes of various types. MCPep is a server designed for non-experts wishing to perform Monte Carlo (MC) simulations of…

TCDB
Dataset

TCDB The Transporter Classification Database

A freely accessible reference database for transport protein research, which…

A freely accessible reference database for transport protein research, which provides structural, functional, mechanistic, evolutionary and disease/medical information about transporters from…

ExTopoDB
Dataset

ExTopoDB

Provides detailed, experimentally verified, annotation of the topology of…

Provides detailed, experimentally verified, annotation of the topology of α-helical transmembrane proteins. ExTopoDB is a database which is an up to date collection of experimentally verified…

TOPDB
Dataset

TOPDB Topology Data Bank of Transmembrane Proteins

Contains information gathered from the literature and from public databases…

Contains information gathered from the literature and from public databases available on the internet for more than a thousand transmembrane proteins. TOPDB collects details of various experiments…

dbTEU
Dataset

dbTEU DataBase of Trace Element Utilization

Provides a biological trace elements database. dbTEU includes all known…

Provides a biological trace elements database. dbTEU includes all known transporters and user proteins (excluding metal-binding chaperones and regulators) for five trace elements: Cu, Mo, Ni, Co and…

PlantsT
Dataset

PlantsT

Combines experimental data regarding mineral composition of mutant and…

Combines experimental data regarding mineral composition of mutant and wild-type strains. PlantsT provides extensive information on motifs and domains, detailed information contributed by individual…

ABCMdb
Dataset

ABCMdb ABC Mutations database

Contains mentions of ATP Binding Cassette (ABC) protein mutations extracted…

Contains mentions of ATP Binding Cassette (ABC) protein mutations extracted from the literature using the MutMiner automated data mining method. The MutMiner pipeline was designed to recognize any…

TrSSP
Web

TrSSP Transporter Substrate Specificity Prediction Server

A web server that implements SVM models. Users can upload or paste protein…

A web server that implements SVM models. Users can upload or paste protein sequences in Fasta format for transporter and substrate prediction. Six prediction modules have been provided on this web…

ABCdb
Dataset

ABCdb

A public resource devoted to the ATP-binding Cassette (ABC) transporters…

A public resource devoted to the ATP-binding Cassette (ABC) transporters encoded by completely sequenced prokaryotic genomes. Querying the database allows to easily retrieve ABC transporter…

TransportTP
Web

TransportTP

A genome-scale transporter prediction and characterization system called…

A genome-scale transporter prediction and characterization system called TransportTP that combined homology-based and machine learning methods in a two-phase classification approach. First,…

YTPdb
Dataset

YTPdb Yeast Transport Protein database

A user-friendly collaborative resource dedicated to the precise classification…

A user-friendly collaborative resource dedicated to the precise classification and annotation of yeast transporters. YTPdb exploits an evolution of the MediaWiki web engine used for popular…

MTDB
Dataset

MTDB Medicago truncatula transporter database

A database of protein sequences of transporters of the model legume Medicago…

A database of protein sequences of transporters of the model legume Medicago truncatula. Both automated search and manual curation were performed in identifying candidate protein sequences. Extensive…

Efflux-RBF
Web

Efflux-RBF

Efflux proteins are membrane proteins, which are involved in the transportation…

Efflux proteins are membrane proteins, which are involved in the transportation of multidrugs. Efflux-RBF allows the classification of efflux proteins using radial basis function networks with…

DISC-GLOB-MEMB-…
Web

DISC-GLOB-MEMB-TRANSPORT

Discriminates the membrane transport proteins from all other globular and…

Discriminates the membrane transport proteins from all other globular and membrane proteins using k-nearest neighbor method with amino acid occurrence as attributes. For discrimination enter your…

TSdb
Dataset

TSdb Transporter substrate database

A manually curated central repository that stores formatted information on the…

A manually curated central repository that stores formatted information on the substrates of transporters. In total, 37608 transporters with 15075 substrates from 884 organisms were curated from…

Transporter-RBF
Web

Transporter-RBF

Classification of transporters using efficient RBF networks with PSSM profiles…

Classification of transporters using efficient RBF networks with PSSM profiles and biochemical properties. Transporter-RBF could be effectively used to identify transporters and discriminating them…

GATMD
Dataset

GATMD GABA Transporter Mutagenesis Database

A web-accessible, relational database of manually annotated biochemical,…

A web-accessible, relational database of manually annotated biochemical, functional, and pharmacological data reported on GAT1 - the most intensely studied GABA transporter isoform. This database and…

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