TransportTP specifications

Information


Unique identifier OMICS_07216
Name TransportTP
Interface Web user interface
Restrictions to use None
Programming languages C++, Perl
Computer skills Basic
Stability Stable
Maintained Yes

Publication for TransportTP

TransportTP in publications

 (5)
PMCID: 5915685
PMID: 29689067
DOI: 10.1371/journal.pone.0196303

[…] the international cytochrome p450 nomenclature criteria were followed (i.e. p450s showing >40% identity were assigned to the same family) []. candidate transporters were identified based on the transporttp server (http://bioinfo3.noble.org/transporter/) with an e-value threshold of 1e-05. candidate colletotrichum-genus-specific genes were identified by blastp search against a local ncbi […]

PMCID: 5737583
PMID: 29126189
DOI: 10.1093/gbe/evx229

[…] residues in that protein was at least twice as high as the average cysteine content of the proteome of that species. membrane transporters were identified using the transporter prediction server transporttp (e value < 1e-05) (). prediction of genes coding for nonribosomal peptide synthase (nrps), polyketide synthase (pks), hybrid nrps-pks, dimethylallyl tryptophan synthase (dmats), […]

PMCID: 5663081
PMID: 29084510
DOI: 10.1186/s12870-017-1115-2

[…] 67 members of the mate family of membrane transporters in s. lycopersicum (additional file  tables s1, additional file  table s2) by using a previously described analysis pipeline [] and the transporttp tool [http://bioinfo3.noble.org/transporter] []. phylogenetic analyses of membrane transporters are usually not accurate to assign specific substrates. however, phylogeny of the mate […]

PMCID: 4986447
PMID: 25381665
DOI: 10.1093/gbe/evu247

[…] modules) were annotated using the dbcan web server (http://csbl.bmb.uga.edu/dbcan/) () at an e value cut-off of 1 e −5. transporters were predicted from the genome sequence by the transporttp tool (http://bioinfo3.noble.org/transporter/) (). reference organisms for our transporttp analysis were: escherichia coli, saccharomyces cerevisiae, arabidopsis thaliana, oryza sativa, […]

PMCID: 4153887
PMID: 25124552
DOI: 10.1186/1471-2164-15-679

[…] mpi, pab, mka, pho, mhu, mja, mla, mth, cdc, amt, drm, mbn, ssg, ele, fnu, mel, mrv, fsv, tsi, lba, ral, sti, msi, sce, eco, ere, aas, eha, sfu, bla, cau). the transportome was determined using the transporttp server [] (reference organism: escherichia coli; e-value threshold: 0.1). results were manually validated and curated using blastp analysis using transportdb [] and taking into account […]


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TransportTP institution(s)
Plant Biology Division, The Samuel Roberts Noble Foundation, Inc, Ardmore, OK, USA

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