TEtools specifications

Unique identifier:
OMICS_14409
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ, SAM
Output format:
TXT
Programming languages:
Python, R
Computer skills:
Advanced
Requirements:
Galaxy
Name:
transposable elements tools
Interface:
Command line interface
Input data:
Rosette file, NGS sequence or alignement, TE copy sequences
Output data:
Read counts.
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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TEtools distribution

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TEtools support

Documentation

Maintainer

  • Cristina Vieira <>

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Publications

Institution(s)

Laboratoire de Biometrie et Biologie Evolutive, UMR CNRS 5558, Université Lyon 1, Université de Lyon, Villeurbanne, France

Funding source(s)

This work was supported by Agence Nationale de la Recherche [Exhyb ANR-14-CE19- 0016-01]; Fondation pour la Recherche Medicale [DEP20131128536]; CNRS; Institut Universitaire de France.

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