TEtools specifications

Information


Unique identifier OMICS_14409
Name TEtools
Alternative name transposable elements tools
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Rosette file, NGS sequence or alignement, TE copy sequences
Input format FASTQ, SAM
Output data Read counts.
Output format TXT
Operating system Unix/Linux, Mac OS
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Galaxy
Maintained Yes

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Maintainer


  • person_outline Cristina Vieira <>

TEtools article

TEtools citation

2017
PMCID: 5499732

[…] were kept as pirnas, reads of 21 nt were considered endo-sirnas, and reads of 21–23 nt were filtered out as putative micrornas (mirnas)., all our sequencing data were treated and analyzed with the tetools pipeline (lerat et al. 2017; https://github.com/l-modolo/tetools) as described thereafter. first, data were trimmed using urqt (modolo and lerat 2015) in order to remove polya tails (from […]

TEtools institution(s)
Laboratoire de Biometrie et Biologie Evolutive, UMR CNRS 5558, Université Lyon 1, Université de Lyon, Villeurbanne, France
TEtools funding source(s)
This work was supported by Agence Nationale de la Recherche [Exhyb ANR-14-CE19- 0016-01]; Fondation pour la Recherche Medicale [DEP20131128536]; CNRS; Institut Universitaire de France.

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