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LoRTE / Long Read Transposable Element
Identifies transposon deletions and insertions between a reference genome and genomes of different strains or populations. Tested against drosophila melanogaster PacBio datasets, LoRTE appears to be a reliable and broadly applicable tools to study the dynamic and evolutionary impact of transposable elements (TEs) using low coverage, long read sequences. We demonstrated that LoRTE performs well even at low coverage PacBio read providing a cost effective tool to study the dynamics and impact of TEs in natural populations.
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