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Transposable element detection software tools | Pool sequencing data analysis

Transposable elements (TEs) are mobile genetic elements that parasitize genomes by semi-autonomously increasing their own copy number within the host genome. While TEs are important for genome evolution, appropriate methods for performing unbiased…
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TEMP
Desktop

TEMP

A method specifically designed to detect TE movements present with a wide range…

A method specifically designed to detect TE movements present with a wide range of frequencies in a population.

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PoPoolation TE
Desktop

PoPoolation TE

A quick and simple pipeline for the analysis of transposable element insertions…

A quick and simple pipeline for the analysis of transposable element insertions in (natural) populations using next generation sequencing.

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LoRTE
Desktop

LoRTE Long Read Transposable Element

Identifies transposon deletions and insertions between a reference genome and…

Identifies transposon deletions and insertions between a reference genome and genomes of different strains or populations. Tested against drosophila melanogaster PacBio datasets, LoRTE appears to be…

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