transsys statistics

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Citations per year

Number of citations per year for the bioinformatics software tool transsys

Tool usage distribution map

This map represents all the scientific publications referring to transsys per scientific context
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transsys specifications


Unique identifier OMICS_19014
Name transsys
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Source code URL
Maintained Yes


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Publication for transsys

transsys citations


A modular strategy for engineering orthogonal chimeric RNA transcription regulators

Nucleic Acids Res
PMCID: 3753616
PMID: 23761434
DOI: 10.1093/nar/gkt452

[…] rom all of our positive results above, we then engineered a chimeric attenuator using a second loop–linear antisense-RNA regulator from the hok/sok post-segregational killing system of plasmid R1 () (TransSys H). Fusion 16 was designed to include the interior loop structure of the TransSys H hairpin, and used the t500 terminator on the antisense plasmid. Results for this chimeric attenuator show a […]


Transcriptional networking

Genome Biol
PMCID: 1242206
PMID: 16168097
DOI: 10.1186/gb-2005-6-9-344

[…] nitiation of sporulation in Bacillus subtilis and nutritional stress in E. coli. Jan Kim (University of East Anglia, Norwich, UK) presented a formal language for describing regulatory systems, called transsys, which, in combination with Lindenmayer systems (a mathematical theory of plant development), can model plant growth patterns under different conditions, ranging from a single cell to the who […]

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transsys institution(s)
Institut für Neuro- und Bioinformatik, Lübeck, Germany
transsys funding source(s)
Supported by the BMBF (Grant 0311378).

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