transsys specifications


Unique identifier OMICS_19014
Name transsys
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Source code URL
Maintained Yes


No version available

Publication for transsys

transsys citations


A modular strategy for engineering orthogonal chimeric RNA transcription regulators

Nucleic Acids Res
PMCID: 3753616
PMID: 23761434
DOI: 10.1093/nar/gkt452

[…] rom all of our positive results above, we then engineered a chimeric attenuator using a second loop–linear antisense-RNA regulator from the hok/sok post-segregational killing system of plasmid R1 () (TransSys H). Fusion 16 was designed to include the interior loop structure of the TransSys H hairpin, and used the t500 terminator on the antisense plasmid. Results for this chimeric attenuator show a […]


Transcriptional networking

Genome Biol
PMCID: 1242206
PMID: 16168097
DOI: 10.1186/gb-2005-6-9-344

[…] nitiation of sporulation in Bacillus subtilis and nutritional stress in E. coli. Jan Kim (University of East Anglia, Norwich, UK) presented a formal language for describing regulatory systems, called transsys, which, in combination with Lindenmayer systems (a mathematical theory of plant development), can model plant growth patterns under different conditions, ranging from a single cell to the who […]

transsys institution(s)
Institut für Neuro- und Bioinformatik, Lübeck, Germany
transsys funding source(s)
Supported by the BMBF (Grant 0311378).

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