TrAp protocols

TrAp specifications

Information


Unique identifier OMICS_06142
Name TrAp
Alternative name Tree Approach
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for Tree Approach

TrAp IN pipeline

2015
PMCID: 4587729
PMID: 26416383
DOI: 10.1186/s12862-015-0485-z

[…] s1).table 1posterior probabilitykα = 3α = 4α = 5α ~ gamma10.000.000.000.0020.000.000.000.0030.000.000.000.0040.780.650.520.6950.200.310.400.2760.010.040.080.0470.000.000.000.00, using a species tree approach, the topology for the four detected lineages was estimated with *beast [57] using 14 independent loci corresponding to the 13 introns plus the cytochrome b gene. in this first analysis, […]

TrAp institution(s)
Department of Pathology, Yale University School of Medicine, New Haven, CT, USA; NYU Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, NY, USA; Yale Cancer Center, New Haven, CT, USA

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