Traph statistics

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Citations per year

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Popular tool citations

chevron_left Known transcript quantification Reference-based transcriptome assembly chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

Traph specifications

Information


Unique identifier OMICS_01295
Name Traph
Alternative name Transcrips in gRAPHs
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.7.2
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Alexandru Tomescu <>
  • person_outline Anna Kuosmanen <>
  • person_outline Veli Makinen <>
  • person_outline Romeo Rizzi <>

Publications for Transcrips in gRAPHs

Traph in publication

PMCID: 4673975
PMID: 26338770
DOI: 10.1093/bioinformatics/btv488

[…] widely used. other methods are stringtie (), scripture (), trinity (), oases (velvet) (), soap-denovo-trans (), ireckon (), class (), flipflop (), isolasso (), mitie (), trans-abyss (), augustus (), traph ()., algorithms are classified by whether they use an alignment to a reference genome sequence, or whether they assemble the reads into full transcripts de novo by identifying overlapping […]


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Traph institution(s)
Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Finland; Department of Computer Science, University of Verona, Italy
Traph funding source(s)
Partially supported by Academy of Finland under grant 250345 (CoECGR).

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