TRAPLINE specifications

Information


Unique identifier OMICS_10971
Name TRAPLINE
Alternative name Transparent Reproducible and Automated PipeLINE
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Input format FASTQ
Biological technology Illumina, Life Technologies
Parallelization MapReduce
Computer skills Basic
Stability Stable
High performance computing Yes
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Olaf Wolkenhauer <>

Publication for Transparent Reproducible and Automated PipeLINE

TRAPLINE institution(s)
Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany; Reference und Translation Center for Cardiac Stem Cell Therapy (RTC), University of Rostock, Rostock, Germany; Gene & Stem Cell Therapy Program, Centenary Institute, Camperdown, Australia; Gene Center Munich, LMU Munich, Munich, Germany; Stellenbosch Institute of Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch, South Africa; Sydney Medical School, University of Sydney, Sydney, NSW, Australia
TRAPLINE funding source(s)
Supported by the Federal Ministry of Education and Research Germany (FKZ 0312138A, FKZ 316159 and FKZ 02NUK043C) and the State Mecklenburg-Western Pomerania with EU Structural Funds (ESF/IV-WM-B34-0030/10 and ESF/IV-BM-B35-0010/12), by the DFG (DA 1296–1), the German Heart Foundation (F/01/12), by the FORUN Program of Rostock University Medical Centre (889001) and the EU funded CaSyM project (grant agreement #305033).

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