Trawler specifications

Unique identifier:
OMICS_06287
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Alternative names:
TrawlerWeb, trawler_standalone
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
BSD 3-clause “New” or “Revised” License, MIT License
Version:
1.2
Requirements:
Java, Ghostscript, Algorithm-Cluster
  • Animals
    • Caenorhabditis elegans
    • Danio rerio
    • Drosophila melanogaster
    • Gallus gallus
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus
    • Xenopus tropicalis
  • Fungi
    • Saccharomyces cerevisiae
  • Plants
    • Arabidopsis thaliana

versioning

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Trawler distribution

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Trawler specifications

Unique identifier:
OMICS_06287
Interface:
Web user interface
Input format:
BED,FASTA
Computer skills:
Basic
Maintained:
Yes
Alternative names:
TrawlerWeb, trawler_standalone
Restrictions to use:
None
Programming languages:
Java, Perl
Stability:
Stable
  • Animals
    • Caenorhabditis elegans
    • Danio rerio
    • Drosophila melanogaster
    • Gallus gallus
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus
    • Xenopus tropicalis
  • Fungi
    • Saccharomyces cerevisiae
  • Plants
    • Arabidopsis thaliana

Trawler support

Documentation

Maintainers

  • Benedict Paten <>
  • Mirana Ramialison <>
  • Laurence Ettwiller <>
  • Yannick Haudry <>
  • Benedict Paten <>
  • Mirana Ramialison <>
  • Laurence Ettwiller <>
  • Yannick Haudry <>

forum

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forum

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Credits

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Publications

Institution(s)

Australian Regenerative Medicine Institute, Systems Biology Institute Australia, Monash University, Clayton, VIC, Australia; eResearch, Monash University, Clayton, VIC, Australia; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA; Department of Biochemistry and Molecular Biology, Bio21 Institute and Cell Signalling Research Laboratories, The University of Melbourne, Melbourne, VIC, Australia; CNRS, Inserm, Institute of Biology Valrose, Université Côte d’Azur, Nice, France; School of Biomedical Sciences, The University of Queensland, Brisbane, QLD, Australia; Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Monash University, Clayton, VIC, Australia; Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC, Australia; Faculty of Information Technology, Monash University, Clayton, VIC, Australia; Murdoch Children’s Research Institute, The Royal Children’s Hospital, Parkville, VIC, Australia; Department of Physiology, School of Biomedical Sciences, The University of Melbourne, Parkville, VIC, Australia

Funding source(s)

Supported by an Australian Research Council Discovery Project grant (DP1049980), a National Health and Medical Research Council/ Heart Foundation Career Development Fellowship (1049980), Sun Foundation and UROP scholarships.

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