TrAp specifications

Information


Unique identifier OMICS_06142
Name TrAp
Alternative name Tree Approach
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


TrAp article

TrAp citations

 (2)
2015
PMCID: 4587729

[…] s1).table 1posterior probabilitykα = 3α = 4α = 5α ~ gamma10.000.000.000.0020.000.000.000.0030.000.000.000.0040.780.650.520.6950.200.310.400.2760.010.040.080.0470.000.000.000.00, using a species tree approach, the topology for the four detected lineages was estimated with *beast [57] using 14 independent loci corresponding to the 13 introns plus the cytochrome b gene. in this first analysis, […]

2012
PMCID: 3318010

[…] extinction from molecular phylogenies [25], [83], we did not test extinction-variable models., finally, to compare the obtained results based on a sample of trees with a single phylogenetic tree approach, we assessed body size evolution in a maximum likelihood (ml), and bayesian consensus (bc) tree. for these one phylogenetic tree approaches we selected the best model using the akaike […]

TrAp institution(s)
Department of Pathology, Yale University School of Medicine, New Haven, CT, USA; NYU Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, NY, USA; Yale Cancer Center, New Haven, CT, USA

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