- Unique identifier:
- Web user interface
- Input data:
- Curated alignments of sequence data for the selected taxa or a FASTA formatted file with unknown query sequences.
- Output data:
- Separate or concatenated alignments.
- Programming languages:
- Tree-Based Alignment Selector
- Restrictions to use:
- Input format:
- Output format:
- PHYLIP, FASTA, XML, CSV, NEXUS
- Computer skills:
- Ignazio Carbone <>
A registration is needed to access to tools.
No open topic.
(Carbone et al., 2016)
T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life.
Center for Integrated Fungal Research, Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA; Department of Biology, Duke University, Durham, NC, USA; School of Plant Sciences, The University of Arizona, Tucson, AZ, USA; Department of Ecology and Evolutionary Biology, The University of Arizona, Tucson, AZ, USA; San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, USA; Department of Medicine, University of Giessen, Giessen, Germany; Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN, USA
Funding for the development of T-BAS was provided by the National Science Foundation (NSF) Dimensions of Biodiversity (DoB) (DEB-1046167, DEB-1045766 and DEB-1046065).
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