Phylogenetic trees are pervasively used to depict evolutionary relationships. Increasingly, researchers need to visualize large trees and compare multiple large trees inferred for the same set of taxa (reflecting uncertainty in the tree inference or genuine discordance among the…
Phylo.io
Web

Phylo.io

A web application to visualise and compare phylogenetic trees side-by-side. Its…

A web application to visualise and compare phylogenetic trees side-by-side. Its distinctive features are: highlighting of similarities and differences between two trees, automatic identification of…

TreeKO
Desktop

TreeKO

Enables the comparison of tree topologies, even in the presence of duplication…

Enables the comparison of tree topologies, even in the presence of duplication and loss events. To do so treeKO recursively splits gene trees into pruned trees containing only orthologs to…

Dendroscope
Desktop

Dendroscope

A program for working with rooted phylogenetic trees and networks. Dendroscope…

A program for working with rooted phylogenetic trees and networks. Dendroscope provides a number of methods for drawing and comparing rooted phylogenetic networks, and for computing them from rooted…

QDist
Desktop

QDist

Computs the quartet distance between two unrooted trees, i.e. the number of…

Computs the quartet distance between two unrooted trees, i.e. the number of quartet topology differences between the trees, where a quartet topology is the topological subtree induced by four…

TOPD/FMTS
Desktop

TOPD/FMTS TOPological Distance/From Multiple To Single

Evaluates similarities and differences between phylogenetic trees. TOPD/FMTS…

Evaluates similarities and differences between phylogenetic trees. TOPD/FMTS combine two different programs to calculate this distance: TOPD and FMTS. First compares two trees with the same taxa or…

Compare2Trees
Web
Desktop

Compare2Trees

An algorithm and software tool for comparing alternative phylogenetic trees.…

An algorithm and software tool for comparing alternative phylogenetic trees. The main application of the software is to compare phylogenies obtained using different phylogenetic methods for some…

TreeVersity
Web

TreeVersity

A web based interactive data visualization tool that allows users to analyze…

A web based interactive data visualization tool that allows users to analyze change in datasets by creating dynamic hierarchies based on the data attributes. TreeVersity2 introduces a novel space…

TreeCmp
Desktop

TreeCmp

A method for comparing unrooted phylogenetic trees with the Matching Cluster…

A method for comparing unrooted phylogenetic trees with the Matching Cluster distance version. In addition, TreeCmp is implemented with other popular metrics for trees that can be computed in…

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