Phylogenetic trees are pervasively used to depict evolutionary relationships. Increasingly, researchers need to visualize large trees and compare multiple large trees inferred for the same set of taxa (reflecting uncertainty in the tree inference or genuine discordance among the…
Desktop app
TOPological… TOPological Distance/From Multiple To Single

TOPD/FMTS TOPological Distance/From Multiple To Single

Evaluates similarities and differences between phylogenetic trees. TOPD/FMTS…

Evaluates similarities and differences between phylogenetic trees. TOPD/FMTS combine two different programs to calculate this distance: TOPD and FMTS. First compares two trees with the same taxa or…

Desktop app
TreeKO TreeKO

TreeKO

Enables the comparison of tree topologies, even in the presence of duplication…

Enables the comparison of tree topologies, even in the presence of duplication and loss events. To do so treeKO recursively splits gene trees into pruned trees containing only orthologs to…

Web app
Phylo.io Phylo.io

Phylo.io

A web application to visualise and compare phylogenetic trees side-by-side. Its…

A web application to visualise and compare phylogenetic trees side-by-side. Its distinctive features are: highlighting of similarities and differences between two trees, automatic identification of…

Web app
Desktop app
Compare2Trees Compare2Trees

Compare2Trees

An algorithm and software tool for comparing alternative phylogenetic trees.…

An algorithm and software tool for comparing alternative phylogenetic trees. The main application of the software is to compare phylogenies obtained using different phylogenetic methods for some…

Web app
TreeVersity TreeVersity

TreeVersity

A web based interactive data visualization tool that allows users to analyze…

A web based interactive data visualization tool that allows users to analyze change in datasets by creating dynamic hierarchies based on the data attributes. TreeVersity2 introduces a novel space…

Desktop app
Dendroscope Dendroscope

Dendroscope

A program for working with rooted phylogenetic trees and networks. Dendroscope…

A program for working with rooted phylogenetic trees and networks. Dendroscope provides a number of methods for drawing and comparing rooted phylogenetic networks, and for computing them from rooted…

Desktop app
TreeCmp Deprecated TreeCmp

TreeCmp

A method for comparing unrooted phylogenetic trees with the Matching Cluster…

A method for comparing unrooted phylogenetic trees with the Matching Cluster distance version. In addition, TreeCmp is implemented with other popular metrics for trees that can be computed in…

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