TreeDom specifications


Unique identifier OMICS_11277
Name TreeDom
Interface Web user interface
Restrictions to use None
Programming languages C++, Javascript, PHP
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Erik Sonnhammer

Publication for TreeDom

TreeDom citation


TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure

Nucleic Acids Res
PMCID: 1538806
PMID: 16844970
DOI: 10.1093/nar/gkl171
call_split See protocol

[…] is implemented in Perl as a web-based service running on an Apache 2.0 web server on a Linux platform (SuSE linux Enterprise Server 9). The core application consists of three main programs: Svgtree, Treedom and Clustalw. The first two programs are full command line tools written in-house in C and Perl, respectively, and can be used as plug-in for other applications. A web interface was built on t […]

TreeDom institution(s)
Stockholm Bioinformatics Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Solna, Sweden; FH OÖ - University of Applied Sciences Upper Austria, Hagenberg, Austria
TreeDom funding source(s)
This work has been supported by the Erasmus programme.

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