TreeDyn specifications


Unique identifier OMICS_04270
Name TreeDyn
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes


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TreeDyn article

TreeDyn citations

PMCID: 5388652

[…] used several bioinformatic programs, coordinated using the bioinformatic portal, to enable alignment (muscle), curation (gblocks), phylogeny (phyml) and tree rendering (treedyn), to reconstruct phylogenetic relationships (dereeper et al. 2008). sequences were identified as vertebrate ids members and a proposed primordial drosophila melanogaster ids gene and protein […]

PMCID: 5398709

[…] 3.1/3.0 (arlt) software was used to assess the clade support, by computing the maximum likelihood tree and alrt test (approximate likelihood ratio test) [42]. finally the tree was drawn using the treedyn 198.3 software [43]., the work described in this manuscript is in no way linked (directly or indirectly) to ethical concerns. no data from humans have been collected. all research activities […]

PMCID: 5754980

[…] support value and a number of bootstrap <50% and 85% were collapsed, respectively. the maximum likelihood method using phyml 3.0 software was utilized to construct the phylogenetic tree.[24] treedyn was used to draw and render the tree., the mic profile of ampicillin and erythromycin (himedia, india) was determined by microdilution method. twenty-four-well microtiter plate was used, 1 ml […]

PMCID: 4871892

[…] test analysis was performed using phyml 3.0 with bootstrap 100 analysis ( using default settings. dendrograms were constructed in newick format using treedyn 198.3 ( nucleotide sequences of meca and ccrb genes determined in this study were submitted to genbank under accession numbers […]

PMCID: 4786556

[…] comparison by log-expectation (muscle) and the phylogeny was ascertained using phyml with alrt (approximate likelihood-ratio test) or bootstrap analysis for branches. the tree was rendered using treedyn. the numbers next to each node, in red, represent a measure of support for the node, where 1 represents maximal support. these have been computed by bootstrapping analyses., the isolated pure […]

TreeDyn institution(s)
Laboratoire de Génétique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, IRD, Montpellier, France; Institut de Biologie du Développement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Marseille, France; Laboratoire de Biologie Virtuelle, CNRS UMR 6543, Université de Nice Sophia Antipolis, Centre de Biochimie, Campus Valrose Nice, France

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