TreeGraph specifications

Information


Unique identifier OMICS_04253
Name TreeGraph
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Kai F. Müller <>

TreeGraph articles

TreeGraph citations

 (3)
2015
PMCID: 4608139

[…] trees [44] with an. christyi treated as the outgroup. consense in phylip then derived a consensus tree and reported the number of times that each branch was recovered in the 1000 trees. treegraph_2.0.47-206_beta [45] was used to draw the consensus tree., as an external validation of rna-seq results, rt-qpcr primers were developed for the following five genes that showed significant […]

2015
PMCID: 4482086

[…] (27) and clustalomega (28). neighbour-joining phylogenetic analysis and protein identity/similarity matrices were generated from multiple alignments using mega5 (29) and matgat (30), respectively. treegraph2 (31) and ugene (32) were routinely used for phylogenetic tree annotation and genome browsing, respectively. logo consensus sequences were generated using weblogo (33). the gene content […]

2013
PMCID: 3788070

[…] bootstrap analyses were conducted using mega v. 5.01 [50] using a heuristic search with 1,000 bootstrap replicates. the bayesian and maximum likelihood phylograms were combined and visualized using treegraph 2 [51]. within group p-distance (uncorrected), as well as net nucleotide divergence between groups were calculated in mega. a kruskall-wallis test was performed to test whether color […]

TreeGraph institution(s)
Nees-Institut für Biodiversität der Pflanzen, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany

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