TreeIllustrator protocols

View TreeIllustrator computational protocol

TreeIllustrator statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Tree visualization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

TreeIllustrator specifications

Information


Unique identifier OMICS_04819
Name TreeIllustrator
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Geert Trooskens <>

Publication for TreeIllustrator

TreeIllustrator in pipeline

2010
PMCID: 2817709
PMID: 20161717
DOI: 10.1371/journal.pbio.1000303

[…] with mafft version 6 using the global alignment g-ins-i. a phylogenetic tree was calculated using the minimum linkage clustering method (http://align.bmr.kyushu-u.ac.jp/mafft/online/server/). treeillustrator 1.0.1 was used to visualize the nexus formats of the mafft results., we thank r. kahmann for reading the manuscript and for helpful comments, j. schirawski, r. kahmann, and g. […]


To access a full list of citations, you will need to upgrade to our premium service.

TreeIllustrator in publications

 (4)
PMCID: 3480424
PMID: 23112831
DOI: 10.1371/journal.pone.0047665

[…] into a final dataset using genedoc . tree reconstruction was carried out using the raxml webserver [http://phylobench.vital-it.ch/raxml-bb/, ]. tree viewing and editing was carried out using atv or treeillustrator v0.52 ., lips was crystallized and crystallographic data sets were collected and reduced as described previously . the structure of wild-type lips (lips-wt) was solved by molecular […]

PMCID: 3474768
PMID: 23082106
DOI: 10.1371/journal.pone.0026742

[…] indicative of horizontal gene transfer , . trees derived from presence or absence of genes as well as concatenated gene sequences were created using either phylip or bionj and visualized with treeillustrator –. the circular representation of pni0373 was produced with circos . the linear map of the full-length prophage present in pni0373 was drawn using genogator […]

PMCID: 2817709
PMID: 20161717
DOI: 10.1371/journal.pbio.1000303

[…] with mafft version 6 using the global alignment g-ins-i. a phylogenetic tree was calculated using the minimum linkage clustering method (http://align.bmr.kyushu-u.ac.jp/mafft/online/server/). treeillustrator 1.0.1 was used to visualize the nexus formats of the mafft results., we thank r. kahmann for reading the manuscript and for helpful comments, j. schirawski, r. kahmann, and g. […]

PMCID: 2788552
PMID: 19930663
DOI: 10.1186/1471-2229-9-136

[…] program itself, and the best scoring tree out of 200,000 cycles from two runs with four markov chains each was picked for comparison with the previous two methods. trees were visualized by either treeillustrator [] or dendroscope []., aa: amino acid; aba: abscisic acid; eea: euonymus europaeus agglutinin; eul: euonymus lectin., ef carried out some of the analyses, prepared the tables […]


To access a full list of publications, you will need to upgrade to our premium service.

TreeIllustrator institution(s)
Laboratorium for Bioinformatics and Computational Genomics (BioBix), Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University Ghent, Belgium; GenOhm Waarloos, Belgium

TreeIllustrator reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TreeIllustrator