TreeKO specifications


Unique identifier OMICS_11552
Name TreeKO
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The input of treeKO are two bifurcated phylogenetic trees in which the species source for the different sequences is indicated (by default a three letters pre-fix is expected). The entry trees should be rooted or a rooting strategy indicated (midpoint rooting is used by default if an un-rooted tree is provided; an option to minimize the total number of inferred duplication is also implemented).
Input format Newick
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes


  • ETE


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  • person_outline Toni Gabaldón <>

Publication for TreeKO

TreeKO institution(s)
Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), UPF, Barcelona, Spain

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