TreeMe statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

TreeMe specifications


Unique identifier OMICS_04822
Name TreeMe
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes


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TreeMe in publications

PMCID: 5857380
PMID: 29345222
DOI: 10.1099/mgen.0.000153

[…] carry out the typing and generate a phylogenetic tree as well as a phyml text output file in newick format. that output file can be imported into other tree visualization software such as mega or treeme. this website is hosted on a university college cork server at ( to type any additional k. marxianus strains, the ipp1, tfc1, gph1, gsy2 and sga1 genes need […]

PMCID: 3922622
PMID: 24490797
DOI: 10.1186/1756-0500-7-77

[…] dendrogram was generated with the hyperbin width set to a value that will resulted in a group of defined amplified fragment sizes. the resulting upgma dendrogram was visualized and edited using the treeme software []., to verify that the polymorphisms were not because of indels in the regions flanking the cpssrs, three pcr products that were randomly selected from each locality were purified […]

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