TreeMe specifications

Information


Unique identifier OMICS_04822
Name TreeMe
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


TreeMe citations

 (2)
library_books

Development and implementation of multilocus sequence typing to study the diversity of the yeast Kluyveromyces marxianus in Italian cheeses

2018
Microb Genom
PMCID: 5857380
PMID: 29345222
DOI: 10.1099/mgen.0.000153

[…] pts carry out the typing and generate a phylogenetic tree as well as a PhyML text output file in Newick format. That output file can be imported into other tree visualization software such as mega or TreeMe. This website is hosted on a University College Cork server at (kmarxianusMLST.ucc.ie). To type any additional K. marxianus strains, the IPP1, TFC1, GPH1, GSY2 and SGA1 genes need to be sequenc […]

library_books

Development of chloroplast simple sequence repeats (cpSSRs) for the intraspecific study of Gracilaria tenuistipitata (Gracilariales, Rhodophyta) from different populations

2014
BMC Res Notes
PMCID: 3922622
PMID: 24490797
DOI: 10.1186/1756-0500-7-77

[…] e dendrogram was generated with the hyperbin width set to a value that will resulted in a group of defined amplified fragment sizes. The resulting UPGMA dendrogram was visualized and edited using the TreeMe software [].To verify that the polymorphisms were not because of indels in the regions flanking the cpSSRs, three PCR products that were randomly selected from each locality were purified and s […]

TreeMe institution(s)
SequentiX - Digital DNA Processing, Klein Raden, Germany

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