TreeMe specifications


Unique identifier OMICS_04822
Name TreeMe
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes


No version available


TreeMe citations


Development and implementation of multilocus sequence typing to study the diversity of the yeast Kluyveromyces marxianus in Italian cheeses

Microb Genom
PMCID: 5857380
PMID: 29345222
DOI: 10.1099/mgen.0.000153

[…] pts carry out the typing and generate a phylogenetic tree as well as a PhyML text output file in Newick format. That output file can be imported into other tree visualization software such as mega or TreeMe. This website is hosted on a University College Cork server at ( To type any additional K. marxianus strains, the IPP1, TFC1, GPH1, GSY2 and SGA1 genes need to be sequenc […]


Development of chloroplast simple sequence repeats (cpSSRs) for the intraspecific study of Gracilaria tenuistipitata (Gracilariales, Rhodophyta) from different populations

BMC Res Notes
PMCID: 3922622
PMID: 24490797
DOI: 10.1186/1756-0500-7-77

[…] e dendrogram was generated with the hyperbin width set to a value that will resulted in a group of defined amplified fragment sizes. The resulting UPGMA dendrogram was visualized and edited using the TreeMe software [].To verify that the polymorphisms were not because of indels in the regions flanking the cpSSRs, three PCR products that were randomly selected from each locality were purified and s […]

TreeMe institution(s)
SequentiX - Digital DNA Processing, Klein Raden, Germany

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