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Treephyler | Taxonomic profiling of metagenomes

A package for fast taxonomic profiling of metagenomes. Treephyler combines the predictive power of tree-based and speed of signature-based approaches. It was evaluated on real metagenome to assess its performance in comparison to previous approaches for taxonomic profiling. Results indicate that Treephyler is in terms of speed and accuracy prepared for next-generation sequencing techniques and large-scale analysis.

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Treephyler forum

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Treephyler classification

Treephyler specifications

Unique identifier:
OMICS_01469
Interface:
Command line interface
Input data:
Nucleotide or protein sequences.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Programming languages:
Perl
Version:
1.1
Maintained:
Yes

Treephyler distribution

versioning

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Treephyler support

Documentation

Credits

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Publications

Institution(s)

Abteilung Bioinformatik, Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Göttingen, Germany; Department of Earth and Environmental Sciences and GeoBioCenterLMU, Ludwig-Maximilians-Universität München, München, Germany; Abteilung Genomische und Angewandte Mikrobiologie, Institut für Mikrobiologie und Genetik, Georg-August-Universität, Göttingen, Germany

Funding source(s)

This work was supported by DFG (German Research Foundation) Priority Program SPP1174 ‘Deep Metazoan Phylogeny’ (Project Wo896/6-1,2).

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