A software tool with a quaternary tree search structure for the analysis of sequence data. This permits rapid searches for sequences of interest in large datasets. This is a terminal based version of TreeSeq that will run on Mac OS. This version of the software demonstrates the basic functionality.

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1 user review

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Chris

I used readonly files as NGS-input and a small 16S FASTA database. Worked very fast.

TreeSeq forum

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TreeSeq classification

TreeSeq specifications

Software type:
Package
Restrictions to use:
None
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Mac OS
Stability:
Stable

Publications

  • (Wintermans et al., 2015) TreeSeq, a Fast and Intuitive Tool for Analysis of Whole Genome and Metagenomic Sequence Data. PloS one.
    PMID: 25933115

TreeSeq support

Maintainer

Credits

Institution(s)

Department of Medical Microbiology and Infection Control, VU University Medical Center, Amsterdam, The Netherlands

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