1 user review
1 user review
Already have an account? Sign in to review this tool.
I used readonly files as NGS-input and a small 16S FASTA database. Worked very fast.
No open topic.
- Software type:
- Restrictions to use:
- Computer skills:
- Command line interface
- Operating system:
- Mac OS
(Wintermans et al., 2015) TreeSeq, a Fast and Intuitive Tool for Analysis of Whole Genome and Metagenomic Sequence Data. PloS one.
- Bastiaan B. Wintermans <bb.wintermans at vumc.nl>
Department of Medical Microbiology and Infection Control, VU University Medical Center, Amsterdam, The Netherlands
Related Sequence homology search tools
Parallelizes the BLAST calculations by dynamically scheduling them across…
Parallelizes the BLAST calculations by dynamically scheduling them across processors using a fault-resilient scheme. ScalaBLAST is designed to run a large number of queries against either large or…
Controls the fully automatic handling of multiple biological databases and of…
Controls the fully automatic handling of multiple biological databases and of hit list calculations on a large scale. HitKeeper implements an asynchronous update system that introduces updates and…
Performs homology searches with operons or gene clusters as basic units,…
Performs homology searches with operons or gene clusters as basic units, instead of single genes. MultiGeneBlast allows users to get a better understanding of the function, evolutionary history, and…
rasbhari Rapid Approach for Seed optimization Based on a Hill-climbing Algorithm that is Repeated Iteratively
Calculates sets of binary patterns for read mapping, database searching and…
Calculates sets of binary patterns for read mapping, database searching and alignment-free sequence comparison. For sequence-homology searching, Rasbhari optimizes the sensitivity of pattern sets.…