TreeSimGM statistics

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TreeSimGM specifications


Unique identifier OMICS_13071
Name TreeSimGM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.3
Stability Stable
rmarkdown, knitr, ape, TreeSim
Source code URL
Maintained Yes


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  • person_outline Tanja Stadler <>

Publication for TreeSimGM

TreeSimGM in publications

PMCID: 4678252
PMID: 26405218
DOI: 10.1093/sysbio/syv065

[…] analysis for empirical systematists, because the number of sampled species is unequivocally known in real data., sets of simulated trees with a given number of tips are generated using the r package treesimgm (). the package allows two options for obtaining trees with a fixed number of tips; we typically use the more computationally efficient option (denoted ‘gsa=false’), which is expected […]

PMCID: 4395845
PMID: 25575504
DOI: 10.1093/sysbio/syv001

[…] of extinction and speciation mode on the tree shape distribution. the next section investigates the consequences via simulations., the model implementation is available as an open source r package treesimgm on cran. in the simulation study, we investigated the effect of extinction and speciation processes on the resulting tree distribution (measured via sackin, colless, β statistics, and the γ […]

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TreeSimGM institution(s)
Institut für Integrative Biologie, Eidgenössiche Technische Hochschule Zurich, Zurich, Switzerland
TreeSimGM funding source(s)
This work was supported by Eidgenössiche Technische Hochschule Zurich.

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