TreeSimGM statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Phylogenetic inference chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

TreeSimGM specifications

Information


Unique identifier OMICS_13071
Name TreeSimGM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.3
Stability Stable
Requirements
rmarkdown, knitr, ape, TreeSim
Source code URL https://cran.r-project.org/src/contrib/TreeSimGM_2.3.tar.gz
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Tanja Stadler <>

Publication for TreeSimGM

TreeSimGM in publications

 (2)
PMCID: 4678252
PMID: 26405218
DOI: 10.1093/sysbio/syv065

[…] analysis for empirical systematists, because the number of sampled species is unequivocally known in real data., sets of simulated trees with a given number of tips are generated using the r package treesimgm (). the package allows two options for obtaining trees with a fixed number of tips; we typically use the more computationally efficient option (denoted ‘gsa=false’), which is expected […]

PMCID: 4395845
PMID: 25575504
DOI: 10.1093/sysbio/syv001

[…] of extinction and speciation mode on the tree shape distribution. the next section investigates the consequences via simulations., the model implementation is available as an open source r package treesimgm on cran. in the simulation study, we investigated the effect of extinction and speciation processes on the resulting tree distribution (measured via sackin, colless, β statistics, and the γ […]


To access a full list of publications, you will need to upgrade to our premium service.

TreeSimGM institution(s)
Institut für Integrative Biologie, Eidgenössiche Technische Hochschule Zurich, Zurich, Switzerland
TreeSimGM funding source(s)
This work was supported by Eidgenössiche Technische Hochschule Zurich.

TreeSimGM reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TreeSimGM