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Popular tool citations

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Associated diseases

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TreeTracker specifications

Information


Unique identifier OMICS_04821
Name TreeTracker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Tree file
Input format TXT
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 1.1
Stability Stable
Source code URL https://www.uv.es/~genomica/treetracker/treeTracker.plx
Maintained Yes

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Maintainer


  • person_outline Ignacio Marin <>

Publication for TreeTracker

TreeTracker in publications

 (2)
PMCID: 2995371
PMID: 21037198
DOI: 10.1093/gbe/evq069

[…] 952 interactions. we used uvcluster () to calculate the secondary distances among the 144 proteins and to generate a hierarchical representation (i.e., a tree) of the interaction graph. we then used treetracker () to test whether any cluster from the tree had a significant enrichment of duplicate genes., the complete set of 498 nuclearly encoded genes with mitochondria go for d. melanogaster […]

PMCID: 2717056
PMID: 19604360
DOI: 10.1186/1752-0509-3-69

[…] encoded by genes included in a general, parent go term. as indicated above, these trees are based on the relative strength of the connections among proteins, based on interactome data. second, treetracker [] was used to determine whether groups of proteins which appeared clustered together in those trees were significantly enriched for some child go terms, hierarchically situated […]


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TreeTracker institution(s)
Departamento de Genética, Universidad de Valencia, Burjassot, Spain; Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (IBV-CSIC), Valencia, Spain
TreeTracker funding source(s)
This work was supported by the Ministerio de Educación y Ciencia (Grant SAF2006-08977).

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