Protocols

TreeTracker specifications

Information


Unique identifier OMICS_04821
Name TreeTracker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Tree file
Input format TXT
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 1.1
Stability Stable
Source code URL https://www.uv.es/~genomica/treetracker/treeTracker.plx
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Ignacio Marin

Publication for TreeTracker

TreeTracker citations

 (2)
library_books

Analyses of Nuclearly Encoded Mitochondrial Genes Suggest Gene Duplication as a Mechanism for Resolving Intralocus Sexually Antagonistic Conflict in Drosophila

2010
Genome Biol Evol
PMCID: 2995371
PMID: 21037198
DOI: 10.1093/gbe/evq069

[…] of 144 mitochondrial proteins (22 of which are duplicates) with 952 interactions. We calculated the secondary distance tree of the network using the program UVCLUSTER () and then we used the program TreeTracker () to compare the hierarchical representation of the interactome with the dichotomic partition (duplicate or nonduplicate) of the mitochondrial gene set. This procedure allowed us to detec […]

call_split

Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell

2009
BMC Syst Biol
PMCID: 2717056
PMID: 19604360
DOI: 10.1186/1752-0509-3-69
call_split See protocol

[…] ed parent GO terms are summarized in Table .Explorations of the dendrograms to estimate the enrichment for GO terms were performed as described in []. This highly sensitive method, implemented in the TreeTracker program, compares the enrichments for child GO terms in the observed tree with those in random simulations based on the same tree topology. Whenever the probability of finding by chance a […]

TreeTracker institution(s)
Departamento de Genética, Universidad de Valencia, Burjassot, Spain; Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (IBV-CSIC), Valencia, Spain
TreeTracker funding source(s)
This work was supported by the Ministerio de Educación y Ciencia (Grant SAF2006-08977).

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