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TreeVector specifications

Information


Unique identifier OMICS_04257
Name TreeVector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained No

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No version available

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This tool is not available anymore.

Information


Unique identifier OMICS_04257
Name TreeVector
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for TreeVector

TreeVector citations

 (3)
library_books

The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

2015
PMCID: 4356964
PMID: 25761566
DOI: 10.1038/srep09040

[…] a substitution model to build the phylogenetic tree. the bootstrap values were obtained from 1000 bootstrap replicates and are presented as percentages. finally, the phylogenetic tree was plotted by treevector (http://supfam.cs.bris.ac.uk/treevector/)., to identify the ndh genes in the published plant mt genomes, the 43 complete mt genomes and the cp genomes of these species or related species […]

library_books

Expression and Characterization of Drosophila Signal Peptide Peptidase Like (sppL), a Gene That Encodes an Intramembrane Protease

2012
PMCID: 3306293
PMID: 22439002
DOI: 10.1371/journal.pone.0033827

[…] higher than 470; blastp scores comparing spp to sppl sequences were between 100 and 150. percent identities () were calculated using clustal w . the phylogram was created using clustal w2 and treevector by comparing sequences for insect spp and sppl orthologs listed in and human sppsppl2a (np_116191), sppl2b (np_694533), sppl2c (np_787078), and sppl3. putative transmembrane domains […]

library_books

SUPERFAMILY 1.75 including a domain centric gene ontology method

2010
PMCID: 3013712
PMID: 21062816
DOI: 10.1093/nar/gkq1130

[…] generated with raxml () using the gamma model of rate heterogeneity. trees are constrained to the ncbi taxonomy () and plotted online as scalable vector graphics (svg) using an extended version of treevector (), and can be downloaded in a variety of formats. superfamilies, families, architectures, go terms and phenotype terms can now be highlighted individually or as combinations […]


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TreeVector institution(s)
Computer Science Department, University of Bristol, Bristol, UK; School of Biological Sciences, University of Bristol, Bristol, UK

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