TreeViewX specifications

Information


Unique identifier OMICS_13038
Alternative name TreeView
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input format NEXUS,NEWICK
Output format NEXUS,NEWICK
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Medium
Version 0.5
Stability Stable
Source code URL http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
Maintained Yes

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Documentation


Maintainers


  • person_outline Roderic Page <>
  • person_outline Rod Page <>

Additional information


http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/

TreeViewX articles

TreeViewX citations

 (4)
2017
PMCID: 5437174

[…] bisection and reconnection option for branch-swapping algorithm. confidence values for individual branches of the resulting trees were determined through bootstrap analysis with 1000 replicate. the treeviewx version 0.5.1 software was used to visualize the phylograms obtained from all analyses. in this analysis, ixodes granulatus (genbank accession no. ab231673) was selected as an outgroup […]

2013
PMCID: 3866200

[…] order (aamodelpr  =  mixed), allowing for a gamma-shaped variation in mutation rates with a proportion of invariable sites (rates  =  invgamma). a consensus tree was obtained and constructed in treeviewx (http://darwin.zoology.gla.ac.uk/rpage/treeviewx/). in the second nucleotide sequence dataset, data for the pcgs and rrnas plus trnas were analyzed separately and in combination (i.e., […]

2010
PMCID: 2996925

[…] gene, relevant amino acid sequences were aligned, a phylogenetic tree was constructed using quartet puzzling algorithm implemented in the tree-puzzle program [39], and the result was visualized by treeviewx [40]. our analysis suggests that the zebrafish has genes coding for rennin, nothepsin and several members of cathepsins (figure 5). however, none of these zebrafish genes resemble […]

2010
PMCID: 2887360

[…] 2cp-c (adeh). multiple sequence alignments and bootstrap trees with 1000 replicates were generated using clustalx2 [59] and the neighbour-joining method [60]. trees were visualized using the program treeview x. [61]. domain informations are given as pfam numbers and domain organizations were analyzed using the conserved domains database (cdd, http://www.ncbi.nlm.nih.gov/structure/cdd/). […]

TreeViewX institution(s)
Division of Environmental and Evolutionary Biology, University of Glasgow, UK

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