TreeViewJ specifications


Unique identifier OMICS_17494
Name TreeViewJ
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data PhyloXML, Newick
Output format PhyloXML, Newick
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 1.1.2
Stability Stable
Apache Maven Package
Maintained Yes




No version available


  • person_outline Matthew Peterson

Publication for TreeViewJ

TreeViewJ citation


Nephele: genotyping via complete composition vectors and MapReduce

Source Code Biol Med
PMCID: 3182884
PMID: 21851626
DOI: 10.1186/1751-0473-6-13

[…] tering matched the clade structure of the trees. The trees for all eight genes, colored by cluster membership, can be seen in Additional File . All phylogenetic trees in this work were produced using TreeViewJ []. The segmented nature of the Influenza genome adds a level of complexity to the genotyping problem. For each sample, the set of clusters for the eight genes can be used to define a cluste […]

TreeViewJ institution(s)
The MITRE Corporation, Bedford, MA, USA; Department of Biomedical Engineering, Boston University, Boston, MA, USA

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