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tRFdb specifications


Unique identifier OMICS_06359
Name tRFdb
Alternative name A relational database of Transfer RNA related Fragments
Restrictions to use None
Maintained Yes


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Plants and Fungi
    • Schizosaccharomyces pombe
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
  • Vertebrates
    • Danio rerio
    • Xenopus laevis


  • person_outline Anindya Dutta

Publication for A relational database of Transfer RNA related Fragments

tRFdb citation


Computational Approaches to tRNA Derived Small RNAs

Noncoding RNA
PMCID: 5832003
PMID: 29657274
DOI: 10.3390/ncrna3010002

[…] ain tRF sequences and evaluate expression counts in multiple experiments []. However, only a limited number of tRF databases are available in the field. In this review, four databases are introduced: tRFdb, tRFinCancer (in the tRF2Cancer), MINTbase, and the Olvedy et al. repertoire of prostate cancer.tRFdb is a relational database of tRFs and other tRNA-related RNA fragments []. tRFdb contains tRF […]

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tRFdb institution(s)
Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, USA
tRFdb funding source(s)
National Institute of Health [P01 CA104106]; Department of Defense [W81XWH-13-1-0088]; Cell and Molecular Biology Training (CMB) grant

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