TRhist specifications

Information


Unique identifier OMICS_00117
Name TRhist
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output data The repeat unit, length of the short tandem repeat (STR), number of mutations in the STR, flanking regions surrounding the STR and other paired-end read.
Output format CSV, FASTA
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.0.1
Stability Stable
Requirements JRE
Source code URL http://trhist.gi.k.u-tokyo.ac.jp/ver1.0.1/TRhist_src.zip
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Shinichi Morishita <>

Additional information


http://trhist.gi.k.u-tokyo.ac.jp/ver1.0.1/TRhistManual.txt

Publication for TRhist

TRhist institution(s)
Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan; Department of Information and Communication Engineering, Faculty of Engineering and Department of Neurology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
TRhist funding source(s)
Supported by Grant-in-Aid for Scientific Research on Innovative Areas (22129008, 221S0002) (in part) from the Ministry of Education, Culture, Sports, Science and Technology of Japan (MEXT) and by the Global COE program (Deciphering Biosphere from Genome Big Bang) from the MEXT.

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