TriageTools protocols

TriageTools specifications

Information


Unique identifier OMICS_04587
Name TriageTools
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format FASTQ
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Version 0.2.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Vincent Detours <>

Additional information


https://sourceforge.net/p/triagetools/wiki/Home/

Publication for TriageTools

TriageTools IN pipeline

2016
PMCID: 5164930
PMID: 27820796
DOI: 10.1038/nchembio.2226

[…] v3 chemistry. raw sequencing data is available from ena under accession number erp014134., reads were trimmed of adapter sequences using cutadapt (v.1.2.1). high-quality reads were extracted using triagetools34 (v0.2.2, long reads –length 35, high-quality bases –quality 9, and complex sequences –lzw 0.33). alignments onto the mm10 genome were carried out using gsnap35 (v2014-02-28) […]

TriageTools institution(s)
IRIBHM, Universite Libre de Bruxelles, Brussels, Belgium; Welbio, Universite Libre de Bruxelles, Brussels, Belgium
TriageTools funding source(s)
Supported by TeleVie grant from the Belgian FNRS.

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