TRIC statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool TRIC

Tool usage distribution map

This map represents all the scientific publications referring to TRIC per scientific context
info info

Associated diseases

This word cloud represents TRIC usage per disease context

Popular tool citations

chevron_left Downstream analysis chevron_right
Want to access the full stats & trends on this tool?


TRIC specifications


Unique identifier OMICS_12616
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Source code URL
Maintained Yes




No version available


  • person_outline Ruedi Aebersold

Publication for TRIC

TRIC citations


Systems Pharmacology Dissection of Cholesterol Regulation Reveals Determinants of Large Pharmacodynamic Variability between Cell Lines

Cell Syst
PMCID: 5747350
PMID: 29226804
DOI: 10.1016/j.cels.2017.11.002

[…] pporting this link, RPL14, YARS, and GARS all show a consistently reduced expression in several conditions in HEK, HeLa, and Huh7 cells (B). Furthermore, all nine proteins from the chaperonin complex TriC/CCT showed decreased expression, whereas the levels of other chaperones were not consistently decreased (). Phosphopeptides of several proteins involved in protein translation (RPL30, RPS3, and E […]


Inference and quantification of peptidoforms in large sample cohorts by SWATH MS

Nat Biotechnol
PMCID: 5593115
PMID: 28604659
DOI: 10.1038/nbt.3908

[…] OpenSwathWorkflow (OpenMS 2.1) and PyProphet ( @93ec307) were used as described above.TRIC (msproteomicstools/master @d2b5e17) was run with the following --file_format openswath --fdr_cutoff 0.01 --max_fdr_quality 0.2 --mst:useRTCorrection True --mst:St […]


A Class of Environmental and Endogenous Toxins Induces BRCA2 Haploinsufficiency and Genome Instability

PMCID: 5457488
PMID: 28575672
DOI: 10.1016/j.cell.2017.05.010
call_split See protocol

[…] 0 human proteins with unique Swiss-Prot identities (). OpenSWATH first identified the peak groups from all individual SWATH maps at a target FDR = 1% and then aligned between SWATH maps using a novel TRIC (TRansfer of Identification Confidence) algorithm that was specifically developed for targeted proteomic data analysis (). The re-quantification feature in OpenSWATH was enabled but only those pe […]


PGCA: An algorithm to link protein groups created from MS/MS data

PLoS One
PMCID: 5451011
PMID: 28562641
DOI: 10.1371/journal.pone.0177569

[…] ].Many software tools have been developed to process MS/MS data addressing the protein identification problem, such as ProteinPilot™ [], ProteinProphet [], Scaffold [], ProteinLP [], ProteinLASSO [], TRIC [], DBParser [], and X!TandemPipeline []. Although the organization of the results varies among these tools, most of them combine the set of all plausible protein identifiers matching a common se […]

Want to access the full list of citations?
TRIC institution(s)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland; Department of Genetics, Stanford University, Stanford, CA, USA; Department of Experimental Oncology, European Institute of Oncology, Milan, Italy; Institute for Immunology, University Medical Center of the Johannes Gutenberg University of Mainz, Mainz, Germany; PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland; Department of Oncology and Hemato-Oncology, University of Milan, Milan, Italy; S3IT, University of Zurich, Zurich, Switzerland; Faculty of Science, University of Zurich, Zurich, Switzerland

TRIC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TRIC