Triform specifications


Unique identifier OMICS_17642
Name Triform
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.99.2
Stability Stable
IRanges, YAML
Source code URL
Maintained Yes


No version available



  • person_outline Finn Drablos

Publication for Triform

Triform citation


Identifying peaks in * seq data using shape information

BMC Bioinformatics
PMCID: 4905608
PMID: 27295177
DOI: 10.1186/s12859-016-1042-5

[…] mér-von Mises test (Qeseq []) have been used. Other approaches include clustering approach (SICER []), Hidden Markov Models (ChIPDiff [], RSEG []), tree shape statistics (TPIC []), shape recognition (Triform []) and probabilistic models (SignalSpider []).From a computational viewpoint, the main lessons learned from the current generation of peak calling algorithms can be summarised as follows: The […]

Triform institution(s)
Division of Sensory Biophysics, Ohio State University, Columbus, OH, USA; Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
Triform funding source(s)
Supported by the FUGE project of the Research Council of Norway through FUGE Bioinformatics [183438/S10] and by internal FUGE funding at NTNU.

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