tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

TRIgS

A collection of tools for downstream analysis of Rep-Seq data, including clustering and phylogenetic analysis. TRigS assists with the determination and analysis of B-cell lineage trees from next-generation sequencing data. TRigS consists in various tools, including 1) AnnotateTree creates annotated lineage trees and sequence alignments showing the point at which amino acid substitutions occur 2) RevertToGermline uses a simple approach to infer the germline ancestor of a B-cell variable region sequence, given the IMGT junction analysis. 3) Clustering tools support the clustering of sequences for clonal analysis, and their large-scale depiction. 4) Tools for junction parsing and results manipluation support the integration of IgBLAST into an IMGT-style pipeline, and ease the processing of tab-separated analysis files.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible

0 user reviews

0 user reviews

No review has been posted.

TRIgS forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

TRIgS versioning

tutorial arrow
×
Upload and version your source code
Get your DOI for better tool traceability. Archive your releases so the community can easily visualize progress on you work.

No versioning.

TRIgS classification

TRIgS specifications

Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Python
First release date:
2015
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

TRIgS support

Documentation

Maintainer

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.

Publications

Institution(s)

Institute of Structural and Molecular Biology, Birkbeck College, University of London, Malet Street, London, UK

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.