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Trimmomatic

Performs a variety of useful trimming tasks for illumina paired-end and single ended data.

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1 user review

1 user review

tnov's avatar image

tnov

Very useful Java tool for adapater trimming, low quality sequence removal, etc.. We are using it almost daily in our DNASeq/RNASeq pipelines.

Trimmomatic forum

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Trimmomatic versioning

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No versioning.

Trimmomatic classification

Trimmomatic specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Stability:
Stable
Galaxy:
https://toolshed.g2.bx.psu.edu/repository?repository_id=ef9e620e9ac844b3
Conda:
https://bioconda.github.io/recipes/trimmomatic/README.html
Interface:
Command line interface
Biological technology:
Illumina
Computer skills:
Advanced
Maintained:
Yes
Debian:
https://packages.qa.debian.org/t/trimmomatic.html

Credits

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Publications

Institution(s)

Department Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Golm,Institut für Biologie I, RWTH Aachen, Aachen and Institute of Bio- and Geosciences: Plant Sciences, Forschungszentrum Jülich, Jülich, Germany

Link to literature

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