Trimmomatic specifications

Information


Unique identifier OMICS_01097
Name Trimmomatic
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.36
Stability Stable
Source code URL http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-Src-0.36.zip
Maintained Yes

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Documentation


Maintainer


  • person_outline Anthony Bolger <>

Trimmomatic article

Trimmomatic institution(s)
Department Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Golm,Institut für Biologie I, RWTH Aachen, Aachen and Institute of Bio- and Geosciences: Plant Sciences, Forschungszentrum Jülich, Jülich, Germany
Trimmomatic funding source(s)
Supported by the BMBF through grants 0315702F, 0315961 and 0315049A and BLE/BMELV Verbundprojekt: G 127/10 IF.

Trimmomatic reviews

 (3)
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Arup Ghosh

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Desktop
A great tool for raw sequence file manipulation. Trimmomatic offers various quality control filters for raw sequenced reads, also the tool is compatible with paired-end sequencing data.

lshepard

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Desktop
Excellent tool for trimming fastq files from Illumina for several NGS applications.

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