TrioCaller

• Wei Chen <weichen.mich at gmail.com>

Division of Pediatric Pulmonary Medicine, Allergy and Immunology, Department of Pediatrics, Children’s Hospital of Pittsburgh of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15224, USA; Department of Biostatistics, University of Pittsburgh School of Public Health, Pittsburgh, Pennsylvania 15224, USA; The Center for Human Genetics Research, Department of Molecular Physiology & Biophysics, and Neurology, Vanderbilt University Medical Center, Nashville, Tennessee 37232, USA; Istituto di Ricerca Genetica e Biomedica, Centro Nazionale di Ricerca (CNR), Monserrato, Cagliari 09042, Italy; Center for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, Michigan 48105, USA; Dipartimento di Scienze Biomediche, Università di Sassari, Sardinia 07100, Italy; Department of Genetics, Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA

• (Chen et al., 2013) Genotype calling and haplotyping in parent-offspring trios. Genome research.
  PMID: 23064751

• (Mainzer et al., 2015) Isaac, the Illumina variant calling workflow. bioRxiv.
  DOI: 10.1101/031021
• (Liu et al., 2013) Variant callers for next-generation sequencing data: a comparison study. PloS one.
  PMID: 24086590
• (Nielsen et al., 2011) Genotype and SNP calling from next-generation sequencing data. Nature reviews Genetics.
  PMID: 21587300
• (Altmann et al., 2012) A beginners guide to SNP calling from high-throughput DNA-sequencing data. Human genetics.
  PMID: 22886560
• (Pabinger et al., 2013) A survey of tools for variant analysis of next-generation genome sequencing data. Briefings in bioinformatics.
  PMID: 23341494
• (Yi et al., 2014) Performance comparison of SNP detection tools with illumina exome sequencing data-an assessment using both family pedigree information and sample-matched SNP array data. Nucleic acids research.
  PMID: 24831545
• (Pirooznia et al., 2014) Validation and assessment of variant calling pipelines for next-generation sequencing. Human genomics.
  PMID: 25078893