TrioCNV specifications

Information


Unique identifier OMICS_11017
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data TrioCNV takes three BAM files of a trio (one for each individual), a pedigree file, a reference genome file (FASTA format) and a mappability file (BigWig format) as input.
Input format BAM, FASTA, BigWig
Output data It generates a tab-delimited file containing final CNV calls.
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Stability Stable
Requirements Apache Maven, Runiversal
Maintained Yes

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Documentation


Maintainer


  • person_outline Yadong Wang <>

TrioCNV article

TrioCNV institution(s)
School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China; Institute for Genomic Medicine, Columbia University, New York, NY, USA; University Program in Genetics and Genomics, Duke University Medical School, Durham, NC, USA; Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA; Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, USA

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