Triplexator statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left DNA triplex prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Triplexator specifications

Information


Unique identifier OMICS_06257
Name Triplexator
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Information


Unique identifier OMICS_06257
Name Triplexator
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Medium
Stability Stable

Versioning


Add your version

Publication for Triplexator

Triplexator in publications

 (6)
PMCID: 5585378
PMID: 28874839
DOI: 10.1038/s41598-017-10853-6

[…] second step, which we will hereafter call topological filtering step (tfs), was aimed at keeping only the smlinc-pc gene neighbors and/or the pairs presenting a triplex structure predicted by the triplexator algorithm (see methods for details). after those two rounds of gene pairs filtering, we obtained a network containing 326 nodes (89 lincrnas and 237 pc genes) that comprised 62.5% […]

PMCID: 5541130
PMID: 28769061
DOI: 10.1038/s41598-017-07295-5

[…] based on the conservation of particle base pairing between these two species (fig. ).figure 1 , a region (chromosome 2: 85765239–85765251) upstream of a mat2a cpg island promoter was identified with triplexator (v1.3.2) and confirmed by surface plasmon resonance diffraction to be a site of particle triplex formation. in silico investigation of particle triplex target sites within the mouse […]

PMCID: 5159544
PMID: 27634931
DOI: 10.1093/nar/gkw802

[…] in hotair, we used triplex domain finder (tdf; http://www.regulatory-genomics.org/tdf/). for a given rna and target dna regions, tdf performs sequence based predictions of triple helices with triplexator () (default parameters). as target dna regions we analyzed: (i) hotair chirp-seq peaks, (ii) promoters of differentially expressed genes (1 kb upstream) or (iii) differentially methylated […]

PMCID: 5314784
PMID: 27580717
DOI: 10.1093/nar/gkw758

[…] to further probe the plausibility of triplex formation as the basis for the observed interaction, we predicted the occurrence of triplex target sites (ttss) along λ dsdna using an algorithm termed triplexator (). as shown in supplementary table s2, when the length of the target sequence is set at a value larger than 19 bp, only two hits (22 793–22 814, 40 465–40 487) are obtained. […]

PMCID: 4872077
PMID: 26773060
DOI: 10.1093/nar/gkw011

[…] when asos were present during or posterior to the g-quadruplexes folding (supplementary figure s4b). data from tht assays confirmed these observations (supplementary figure s4c). in agreement with triplexator software predictions (), duplex dna containing the pqss incubated in the presence of asos did not form triplex dna structures (supplementary figure s4d). thereby, results show that asos […]


To access a full list of publications, you will need to upgrade to our premium service.

Triplexator institution(s)
Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia

Triplexator reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Triplexator