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TriTISA specifications

Information


Unique identifier OMICS_09992
Name TriTISA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained No

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Publication for TriTISA

TriTISA citations

 (3)
library_books

Complete Genome Sequence of Borrelia afzelii K78 and Comparative Genome Analysis

2015
PMCID: 4370689
PMID: 25798594
DOI: 10.1371/journal.pone.0120548

[…] [], cog [], cdd [], tigrfam [], pfam [] and rfam []. to optimize the results of the gene prediction with glimmer3, the translation initiation sites of the annotated genes were analyzed with the tritisa program [] and manually compared with the genes of the known annotated borrelia genomes. further manual refinement included information from interproscan [] and alignments […]

library_books

Genome reannotation of Escherichia coli CFT073 with new insights into virulence

2009
PMCID: 2785843
PMID: 19930606
DOI: 10.1186/1471-2164-10-552

[…] evidence (including those obtained by alignments of n-terminal sequences; tagged as ipt), 2) conserved domain search (cdc), 3) alignments of orthologous genes (hsc), and 4) predictions from tritisa [] for the rest of genes; a complete list can be retrieved from the protisa database [,]. although annotated by computational methods, tiss in categories of both cdc and hsc are believed […]

library_books

Adaptation of the short intergenic spacers between co directional genes to the Shine Dalgarno motif among prokaryote genomes

2009
PMCID: 2784483
PMID: 19922619
DOI: 10.1186/1471-2164-10-537

[…] predictions affect our conclusions, we analyzed the distribution of distances between co-directional genes calculated with the ncbi annotations and those calculated with the annotations refined by tritisa [], a post-processor program for refining the annotations of translation initiation site. we compared the two distributions (additional file ) using paired samples t-test and found […]


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TriTISA institution(s)
State Key Lab for Turbulence and Complex Systems, Department of Biomedical Engineering, College of Engineering, Peking University, Beijing, China; Center for Theoretical Biology, Peking University, Beijing, China
TriTISA funding source(s)
The National Natural Science Foundation of China (10225210, 30770499 and 10721403); the National Basic Research Program of China (2003CB715905)

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