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Transfer RNA databases | Non-coding RNA data analysis

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mitotRNAdb
Dataset

mitotRNAdb

Offers data about mammalian mitochondrial tRNA sequences. mitotRNAdb allows…

Offers data about mammalian mitochondrial tRNA sequences. mitotRNAdb allows implementation and validation of algorithms and can process to automated nucleic acid data transfer. It combines tRNA gene…

GtRNAdb
Dataset

GtRNAdb Genomic tRNA Database

Provides overview statistics of tRNA genes within each analyzed genome,…

Provides overview statistics of tRNA genes within each analyzed genome, including information by isotype and genetic locus, easily downloadable primary sequences, graphical secondary structures and…

Islander
Dataset

Islander

Identifies tDNAs, finds fragments of those tDNAs in the same replicon and…

Identifies tDNAs, finds fragments of those tDNAs in the same replicon and removes unlikely candidate islands through a series of filters. The website Islander presents these precisely mapped…

tRNADB-CE
Dataset

tRNADB-CE tRNA Gene DataBase Curated by Experts

A transfer RNA database. tRNADB-CE was constructed by analyzing 1,966 complete…

A transfer RNA database. tRNADB-CE was constructed by analyzing 1,966 complete and 5,272 draft genomes of prokaryotes, 171 viruses', 121 chloroplasts', and 12 eukaryotes' genomes plus…

tRNAdb
Dataset

tRNAdb Transfer RNA database

Contains currently more than 12,000 tRNA genes from 577 species and 623 tRNA…

Contains currently more than 12,000 tRNA genes from 577 species and 623 tRNA sequences from 104 species, classified into families according to amino acid specificity as defined by anticodon triplets.…

PlantRNA
Dataset

PlantRNA

Compiles transfer RNA (tRNA) gene sequences retrieved from fully annotated…

Compiles transfer RNA (tRNA) gene sequences retrieved from fully annotated plant nuclear, plastidial and mitochondrial genomes. The set of annotated tRNA gene sequences has been manually curated for…

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tRNAmodviz
Web

tRNAmodviz

A web server for easy comparative analysis and visualization of modification…

A web server for easy comparative analysis and visualization of modification patterns in individual tRNAs. TRNAmodviz facilitates comparative studies of tRNA modifications and identification of…

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FDb.UCSC.tRNAs
Dataset

FDb.UCSC.tRNAs

Offers an annotation database generated from UCSC in form of FeatureDb objects.

Offers an annotation database generated from UCSC in form of FeatureDb objects.

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The L.…
Dataset

The L. monocytogenes 10403S BioCyc database

A resource for researchers studying Listeria and related organisms. The L.…

A resource for researchers studying Listeria and related organisms. The L. monocytogenes 10403S BioCyc database allows users to (i) have a comprehensive view of all reactions and pathways predicted…

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Mamit-tRNA
Dataset

Mamit-tRNA

Displays static individual 2D structures of human mitochondrial tRNA genes with…

Displays static individual 2D structures of human mitochondrial tRNA genes with location of polymorphisms and pathology-related point mutations. Mamit-tRNA is a database for mammalian mitochondrial…

SPLITSdb
Dataset

SPLITSdb

Stores and retrieves complete set of tRNA sequences in all archaeal species and…

Stores and retrieves complete set of tRNA sequences in all archaeal species and primitive eukaryotic species to promote the next study of tRNA evolution and tRNA processing. SPLITSdb contains 3,741…

ListeriaBase
Dataset

ListeriaBase

Facilitates comparative analysis of Listeria spp. ListeriaBase currently houses…

Facilitates comparative analysis of Listeria spp. ListeriaBase currently houses 850,402 protein-coding genes, 18,113 RNAs and 15,576 tRNAs from 285 genome sequences of different Listeria strains. It…

StaphyloBase
Dataset

StaphyloBase

Developed with the goal of having a one-stop genomic resource platform for the…

Developed with the goal of having a one-stop genomic resource platform for the scientific community to access, retrieve, download, browse, search, visualize and analyse the staphylococcal genomic…

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