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tRNA-derived RNA annotation software tools | Small RNA sequencing

Small RNA-sequencing has revealed the diversity and high abundance of small RNAs derived from tRNAs, referred to as tRNA-derived RNAs. Source text: Selitsky and Sethupathy, 2015.

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tRF2Cancer
Web

tRF2Cancer

Facilitates the identification of tRNA-derived small RNA fragments (tRFs) to…

Facilitates the identification of tRNA-derived small RNA fragments (tRFs) to study their expression in cancers from deep-sequencing data with user-friendly interfaces and time-efficient algorithms.…

MINTmap
Desktop

MINTmap MItochondrial and Nuclear TRF mapping

Identifies the subset of discovered transfer RNA fragments (tRFs) that could be…

Identifies the subset of discovered transfer RNA fragments (tRFs) that could be originating outside of tRNA space and flags them as candidate false positives. MINTmap is a method and a software…

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tDRmapper
Desktop

tDRmapper

A tool for mapping, naming, and quantifying tRNA-derived RNAs (tDRs). tDRmapper…

A tool for mapping, naming, and quantifying tRNA-derived RNAs (tDRs). tDRmapper was designed specifically for human small RNA-seq data (single-end, 50x) generated on the Illumina sequencing platform…

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HAMR
Desktop
Web

HAMR High-throughput Annotation of Modified Ribonucleotides

A web application that allows you to detect and classify modified nucleotides…

A web application that allows you to detect and classify modified nucleotides in RNA-seq data. HAMR scans RNA-sequencing data for sites showing potential signatures of nucleotide modification. Simply…

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